Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QU238_RS17075 Genome accession   NZ_CP128609
Coordinates   3496080..3496685 (-) Length   201 a.a.
NCBI ID   WP_151418736.1    Uniprot ID   -
Organism   Escherichia coli strain HZ13     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3491080..3501685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU238_RS17055 (QU238_17055) aes 3491117..3492076 (+) 960 WP_000801813.1 acetyl esterase -
  QU238_RS17060 (QU238_17060) hemH 3492073..3493035 (-) 963 WP_001250103.1 ferrochelatase -
  QU238_RS17065 (QU238_17065) adk 3493271..3493915 (-) 645 WP_001220233.1 adenylate kinase -
  QU238_RS17070 (QU238_17070) htpG 3494096..3495970 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  QU238_RS17075 (QU238_17075) recR 3496080..3496685 (-) 606 WP_151418736.1 recombination mediator RecR Machinery gene
  QU238_RS17080 (QU238_17080) ybaB 3496685..3497014 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QU238_RS17085 (QU238_17085) dnaX 3497067..3498998 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  QU238_RS17090 (QU238_17090) apt 3499127..3499678 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QU238_RS17095 (QU238_17095) ybaN 3499831..3500208 (-) 378 WP_001188905.1 DUF454 family protein -
  QU238_RS17100 (QU238_17100) priC 3500278..3500805 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  QU238_RS17105 (QU238_17105) rsmS 3500819..3500980 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21991.05 Da        Isoelectric Point: 4.9097

>NTDB_id=775041 QU238_RS17075 WP_151418736.1 3496080..3496685(-) (recR) [Escherichia coli strain HZ13]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEVTANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=775041 QU238_RS17075 WP_151418736.1 3496080..3496685(-) (recR) [Escherichia coli strain HZ13]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGTTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.724

99.005

0.443
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.005

0.438