Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PF976_RS08100 Genome accession   NZ_CP116011
Coordinates   1534379..1535278 (+) Length   299 a.a.
NCBI ID   WP_013352246.1    Uniprot ID   A0A9P1JH57
Organism   Bacillus amyloliquefaciens strain SRCM124317     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1529379..1540278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF976_RS08080 (PF976_08080) - 1530069..1531772 (+) 1704 WP_014470403.1 hypothetical protein -
  PF976_RS08085 (PF976_08085) - 1531769..1532050 (+) 282 WP_013352243.1 FlhB-like flagellar biosynthesis protein -
  PF976_RS08090 (PF976_08090) sucC 1532225..1533382 (+) 1158 WP_013352244.1 ADP-forming succinate--CoA ligase subunit beta -
  PF976_RS08095 (PF976_08095) sucD 1533411..1534313 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  PF976_RS08100 (PF976_08100) dprA 1534379..1535278 (+) 900 WP_013352246.1 DNA-processing protein DprA Machinery gene
  PF976_RS08105 (PF976_08105) topA 1535460..1537535 (+) 2076 WP_014470402.1 type I DNA topoisomerase -
  PF976_RS08110 (PF976_08110) trmFO 1537600..1538907 (+) 1308 WP_013352248.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  PF976_RS08115 (PF976_08115) xerC 1538977..1539894 (+) 918 WP_013352249.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32875.04 Da        Isoelectric Point: 9.4258

>NTDB_id=775027 PF976_RS08100 WP_013352246.1 1534379..1535278(+) (dprA) [Bacillus amyloliquefaciens strain SRCM124317]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLRDPHPLTVLSEGKTAPKAIFREIERKEPELDKVLSDYRREGSTVI
PISSSRYPSWLKTIYDPPAVLFAKGHTSLLEKGRKIGIVGTRKPTEDGIKAVGHLTAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARGVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=775027 PF976_RS08100 WP_013352246.1 1534379..1535278(+) (dprA) [Bacillus amyloliquefaciens strain SRCM124317]
TTGGATCAAGCGTCGCGCTGTTTAATGGTCTGCAGTATCAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACGAGATCCGCATCCATTAACTGTTTTGTCAGAAGGGAAAACAGCTCCGAAAGCAA
TTTTTCGAGAAATAGAGCGCAAGGAACCGGAACTTGATAAAGTTCTGTCCGATTACCGCCGAGAAGGCAGTACTGTCATC
CCGATTTCATCAAGCCGCTATCCTTCATGGCTTAAAACAATTTATGATCCGCCGGCTGTCTTGTTTGCAAAAGGGCATAC
GTCACTTCTTGAAAAAGGCAGAAAAATAGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTACCGCTGAACTCTCAAAAAAAGGCTGGGTCATAGTAAGCGGGCTGGCATCCGGCATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTAATAGCCGGCGGATTCCATCATATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATATATGGCTGAACATCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAGTGGCATTTTC
CGATGAGAAACCGCATAATCAGCGGATTAAGTGAAGGAATTGTAGTTGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACGGCTTATCAAGCCCTTGATCAAGGGAGAGAGGTATTTGCCGTTCCCGGTTCCATTTTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCGGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGAGGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

71.237

100

0.712
  dprA Lactococcus lactis subsp. cremoris KW2

41.935

93.311

0.391