Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   PF976_RS05660 Genome accession   NZ_CP116011
Coordinates   1078896..1079849 (+) Length   317 a.a.
NCBI ID   WP_013351813.1    Uniprot ID   A0AAP7TCS7
Organism   Bacillus amyloliquefaciens strain SRCM124317     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1073896..1084849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF976_RS05635 (PF976_05635) argF 1075704..1076660 (+) 957 WP_013351808.1 ornithine carbamoyltransferase -
  PF976_RS05640 (PF976_05640) - 1076752..1076931 (+) 180 WP_013351809.1 YjzC family protein -
  PF976_RS05645 (PF976_05645) - 1076972..1077160 (-) 189 WP_013351810.1 YjzD family protein -
  PF976_RS05650 (PF976_05650) - 1077421..1078155 (+) 735 WP_014471691.1 hypothetical protein -
  PF976_RS05655 (PF976_05655) - 1078236..1078802 (+) 567 WP_013351812.1 hypothetical protein -
  PF976_RS05660 (PF976_05660) med 1078896..1079849 (+) 954 WP_013351813.1 BMP family ABC transporter substrate-binding protein Regulator
  PF976_RS05665 (PF976_05665) comZ 1079862..1080053 (+) 192 WP_013351814.1 ComZ family protein Regulator
  PF976_RS05670 (PF976_05670) - 1080083..1080301 (-) 219 WP_013351815.1 hypothetical protein -
  PF976_RS05675 (PF976_05675) - 1080467..1081405 (+) 939 WP_013351816.1 beta-ketoacyl-ACP synthase III -
  PF976_RS05680 (PF976_05680) fabF 1081429..1082667 (+) 1239 WP_013351817.1 beta-ketoacyl-ACP synthase II -
  PF976_RS05685 (PF976_05685) - 1082751..1083536 (+) 786 WP_014470617.1 DUF2268 domain-containing protein -
  PF976_RS05690 (PF976_05690) - 1083710..1084696 (+) 987 WP_014470616.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35342.94 Da        Isoelectric Point: 4.5494

>NTDB_id=775016 PF976_RS05660 WP_013351813.1 1078896..1079849(+) (med) [Bacillus amyloliquefaciens strain SRCM124317]
MITRLVMIFSVLLLLSGCAQTPFKGKIEKVGMLFPDTISDLVWGTKGYKGLLAIQSEFNVDVYYKENIRSDEDILKAIDD
LHKKGVNLLYGHGNEYEEIFNMISKDYPDMEFVVANGTAKNDNVTSVHLMGEAMGFFGGMTAAHMSKTNEVGVIASFLWQ
PEVDGFIKGAKYENPDITVNTEFTDHWDNGNEALHLYEKLKAEGTDVVYPAGDGYNVPVIQQIKKDGLYAIGYVAEQSYL
GKNTVLTSTVQNVDKAYTLIAEQYNKGTLKSGDHNFDFREGVVEMGTFSPLVDKAFQDKISDLVKTYNQTNELPSNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=775016 PF976_RS05660 WP_013351813.1 1078896..1079849(+) (med) [Bacillus amyloliquefaciens strain SRCM124317]
TTGATCACCAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGCGGGTGCGCACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGAATGCTTTTTCCCGATACCATCAGTGACCTGGTATGGGGCACAAAAGGTTACAAAGGTTTATTAGCGA
TACAATCTGAATTTAACGTTGACGTTTATTATAAAGAAAATATCAGATCTGATGAAGATATTTTAAAAGCGATAGATGAT
TTGCATAAAAAAGGAGTCAATCTTTTATACGGGCACGGAAATGAATACGAGGAAATCTTCAATATGATCAGCAAGGATTA
TCCCGATATGGAGTTCGTCGTCGCAAACGGAACGGCGAAAAACGATAATGTCACAAGCGTTCATCTCATGGGAGAAGCGA
TGGGCTTTTTCGGGGGAATGACGGCTGCCCATATGTCAAAAACCAATGAGGTCGGCGTCATCGCCTCGTTCTTATGGCAG
CCTGAAGTAGACGGCTTTATCAAAGGGGCGAAATACGAAAATCCCGATATCACCGTCAATACTGAATTTACGGACCACTG
GGATAACGGCAATGAAGCGCTGCATCTTTACGAGAAGTTAAAAGCGGAAGGCACGGATGTTGTGTATCCGGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGGCTTTACGCCATCGGCTATGTCGCCGAGCAATCGTATCTC
GGCAAAAACACGGTGCTGACAAGCACCGTGCAAAATGTAGACAAAGCTTATACATTAATCGCCGAGCAATATAATAAAGG
TACGCTCAAGAGCGGAGATCACAACTTCGATTTCAGGGAAGGAGTCGTTGAAATGGGGACGTTCAGCCCTTTGGTGGACA
AAGCCTTTCAAGACAAAATCTCAGACCTTGTAAAAACGTATAACCAAACAAATGAACTGCCGTCAAATGAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

78.549

100

0.785