Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   PF976_RS05290 Genome accession   NZ_CP116011
Coordinates   1005527..1006105 (+) Length   192 a.a.
NCBI ID   WP_013351744.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SRCM124317     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1000527..1011105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF976_RS20285 - 1001029..1001544 (-) 516 WP_373418731.1 methyl-accepting chemotaxis protein -
  PF976_RS20290 - 1001836..1002210 (-) 375 Protein_989 protoglobin domain-containing protein -
  PF976_RS05275 (PF976_05275) - 1002444..1003967 (-) 1524 Protein_990 FAD-dependent oxidoreductase -
  PF976_RS05280 (PF976_05280) - 1004091..1004948 (+) 858 WP_013351742.1 SDR family oxidoreductase -
  PF976_RS05285 (PF976_05285) - 1004978..1005211 (-) 234 WP_013351743.1 IDEAL domain-containing protein -
  PF976_RS05290 (PF976_05290) comK 1005527..1006105 (+) 579 WP_013351744.1 competence protein ComK Regulator
  PF976_RS05295 (PF976_05295) - 1006252..1006623 (+) 372 WP_013351745.1 iron chaperone -
  PF976_RS05300 (PF976_05300) eis 1006660..1007871 (-) 1212 WP_013351746.1 GNAT family N-acetyltransferase -
  PF976_RS05305 (PF976_05305) - 1008025..1008735 (-) 711 WP_014470007.1 YrpD family protein -
  PF976_RS05310 (PF976_05310) - 1008931..1009200 (+) 270 WP_013351748.1 excalibur calcium-binding domain-containing protein -
  PF976_RS05315 (PF976_05315) - 1009232..1009549 (-) 318 WP_003155166.1 YbjQ family protein -
  PF976_RS05320 (PF976_05320) - 1009591..1011060 (-) 1470 WP_013351749.1 sodium:solute symporter family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22287.57 Da        Isoelectric Point: 8.1411

>NTDB_id=775013 PF976_RS05290 WP_013351744.1 1005527..1006105(+) (comK) [Bacillus amyloliquefaciens strain SRCM124317]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=775013 PF976_RS05290 WP_013351744.1 1005527..1006105(+) (comK) [Bacillus amyloliquefaciens strain SRCM124317]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATTGACAGAA
GCTGCCGCTACTTTGGCTCAAGCTATGCCGGGAGAAAAGCGGGAACGTATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCAGCACGGCCTCAATGCGGCTGGATATCTCA
CGTGCACGTTAAAGATTTTCAGCCGACCGCATTTGATGACACGGCGGTCACGTTCTCAAACGGCAAAACGATGGAGCTGG
AAGTATCCTACCATTCTTTTGAAAACCAAGTCTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGC
CATATCCCGAAGCGGCAGGAATTCATGCTGTACCCGAAAGAAGAGCGGACGAAAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.812

100

0.828