Detailed information NTG0775009

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QU238_RS05055
• Genome accession: NZ_CP128609
• Coordinates: 1038759..1039751 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain HZ13
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1033759..1044751

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QU238_RS05025 (QU238_05025)	ispD	1033820..1034530 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QU238_RS05030 (QU238_05030)	ispF	1034530..1035009 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QU238_RS05035 (QU238_05035)	truD	1035006..1036055 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
QU238_RS05040 (QU238_05040)	surE	1036036..1036797 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QU238_RS05045 (QU238_05045)	pcm	1036791..1037417 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QU238_RS05050 (QU238_05050)	nlpD	1037602..1038696 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
QU238_RS05055 (QU238_05055)	rpoS	1038759..1039751 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QU238_RS05060 (QU238_05060)	ygbN	1039845..1041209 (-)	1365	WP_151418604.1	GntP family transporter	-
QU238_RS05065 (QU238_05065)	ygbM	1041298..1042074 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
QU238_RS05070 (QU238_05070)	ygbL	1042079..1042717 (-)	639	WP_001278994.1	aldolase	-
QU238_RS05075 (QU238_05075)	otnK	1042714..1043976 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=775009 QU238_RS05055 WP_000081550.1 1038759..1039751(+) (rpoS) [Escherichia coli strain HZ13]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=775009 QU238_RS05055 WP_000081550.1 1038759..1039751(+) (rpoS) [Escherichia coli strain HZ13]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715