Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   PF976_RS04225 Genome accession   NZ_CP116011
Coordinates   812366..813157 (+) Length   263 a.a.
NCBI ID   WP_013351434.1    Uniprot ID   A0AAP7TA01
Organism   Bacillus amyloliquefaciens strain SRCM124317     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 807366..818157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF976_RS04200 (PF976_04200) - 809363..810247 (+) 885 WP_013351430.1 PhzF family phenazine biosynthesis isomerase -
  PF976_RS04205 (PF976_04205) - 810324..810908 (+) 585 WP_013351431.1 nitroreductase -
  PF976_RS04210 (PF976_04210) - 810945..811136 (-) 192 WP_147786093.1 YfhD family protein -
  PF976_RS04215 (PF976_04215) - 811207..811317 (-) 111 WP_003223230.1 YfhE family protein -
  PF976_RS04220 (PF976_04220) - 811375..812274 (-) 900 WP_013351433.1 TIGR01777 family oxidoreductase -
  PF976_RS04225 (PF976_04225) recX 812366..813157 (+) 792 WP_013351434.1 recombination regulator RecX Regulator
  PF976_RS04230 (PF976_04230) - 813164..813478 (+) 315 WP_013351435.1 YfhH family protein -
  PF976_RS04235 (PF976_04235) - 813726..814814 (+) 1089 WP_232469729.1 MFS transporter -
  PF976_RS04240 (PF976_04240) - 814853..815245 (-) 393 WP_014469928.1 DUF2606 family protein -
  PF976_RS04245 (PF976_04245) - 815208..816119 (-) 912 WP_014469929.1 trypsin-like serine peptidase -
  PF976_RS04250 (PF976_04250) - 816257..816409 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  PF976_RS04255 (PF976_04255) - 816533..816802 (+) 270 WP_013351439.1 YfhJ family protein -
  PF976_RS04260 (PF976_04260) - 816935..817462 (+) 528 WP_014469930.1 SH3 domain-containing protein -
  PF976_RS04265 (PF976_04265) - 817548..817880 (+) 333 WP_014469931.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 31009.23 Da        Isoelectric Point: 6.2753

>NTDB_id=775009 PF976_RS04225 WP_013351434.1 812366..813157(+) (recX) [Bacillus amyloliquefaciens strain SRCM124317]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEISHGDEVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPEMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKTHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIEQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=775009 PF976_RS04225 WP_013351434.1 812366..813157(+) (recX) [Bacillus amyloliquefaciens strain SRCM124317]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAACGCTTCAACATCTTCCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTTCGTTTTGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCA
GTCACGGCGATGAAGTGAAAAAAGCCTTTAACCGCGCCGTCGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGACCATTTGAAAAAAAAAGAAACACCTGAGATGGTTATTTCTGAAGTCATCCACAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCCGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGGCCTGACGTCCTGTTTCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATTAAGGAGACGCTCAGTGCGTTTACGTTTGATGAGCAGATACAGGAA
GCGCTGAAACATATCGGAAAAATCCTGAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCCCAGATGCA
GCTTCAGCGAAAAGGCTTCCCTTTCGACGTCATCAATGCCGCTCTGGAGCAGACGGAGTATGAGAATGATGACGAAGCTG
AGATGGAAGCTTTGAAGACTCATGCGGAAAAAGCAATCAGGAAATACCGCTATGACGGCAGCTATGAAAGCGGAATGAAG
GTCAAGCAGTACTTATTCAGAAAAGGATTCTCGATTGACGACATTGAACAATTTTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.468

100

0.795