Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   PF976_RS01545 Genome accession   NZ_CP116011
Coordinates   283205..283603 (-) Length   132 a.a.
NCBI ID   WP_013350967.1    Uniprot ID   A0A9P1JDU7
Organism   Bacillus amyloliquefaciens strain SRCM124317     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 278205..288603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF976_RS01520 (PF976_01520) - 278375..279577 (+) 1203 WP_271229906.1 GTP-binding protein -
  PF976_RS01525 (PF976_01525) - 279641..280777 (+) 1137 WP_014469722.1 zinc-dependent alcohol dehydrogenase -
  PF976_RS01530 (PF976_01530) - 280792..281226 (+) 435 WP_013350964.1 RDD family protein -
  PF976_RS01535 (PF976_01535) - 281300..281623 (+) 324 WP_013350965.1 YckD family protein -
  PF976_RS01540 (PF976_01540) - 281728..283164 (+) 1437 WP_013350966.1 glycoside hydrolase family 1 protein -
  PF976_RS01545 (PF976_01545) nin/comJ 283205..283603 (-) 399 WP_013350967.1 competence protein ComJ Regulator
  PF976_RS01550 (PF976_01550) nucA/comI 283624..284061 (-) 438 WP_013350968.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  PF976_RS01555 (PF976_01555) hxlB 284412..284969 (-) 558 WP_013350969.1 6-phospho-3-hexuloisomerase -
  PF976_RS01560 (PF976_01560) hxlA 284966..285601 (-) 636 WP_013350970.1 3-hexulose-6-phosphate synthase -
  PF976_RS01565 (PF976_01565) - 285833..286195 (+) 363 WP_013350971.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14942.92 Da        Isoelectric Point: 4.4508

>NTDB_id=775004 PF976_RS01545 WP_013350967.1 283205..283603(-) (nin/comJ) [Bacillus amyloliquefaciens strain SRCM124317]
MIKSWKPQELTISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADDAVSFEAGRNTKAFIVLRLNTNEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFDLPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=775004 PF976_RS01545 WP_013350967.1 283205..283603(-) (nin/comJ) [Bacillus amyloliquefaciens strain SRCM124317]
TTGATTAAATCATGGAAACCGCAAGAACTGACCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATACGCGGAGGCTGACGATGCTGTTTCATTTGAAGCAGGGAGAA
ATACGAAGGCATTTATCGTCCTGAGGCTGAACACAAATGAGCCGGTGCCATCCTATGAGAAAAAAGCGACTGTTCCCTTC
GAGGCTGTAAAAGATGGGATTGAAATTGAAAGCGTGATGTCAAAAAGGCTTTTCTTCGATCTTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCAGATACGTATATTATTGATGCGGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

76.515

100

0.765