Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   PF976_RS00055 Genome accession   NZ_CP116011
Coordinates   6087..6377 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SRCM124317     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1087..11377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF976_RS00015 (PF976_00015) darA 1104..1433 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  PF976_RS00020 (PF976_00020) - 1446..1886 (+) 441 WP_013350745.1 YaaR family protein -
  PF976_RS00025 (PF976_00025) holB 1898..2887 (+) 990 WP_013350746.1 DNA polymerase III subunit delta' -
  PF976_RS00030 (PF976_00030) ricT 2890..3717 (+) 828 WP_013350747.1 competence/sporulation regulator complex protein RicT -
  PF976_RS00035 (PF976_00035) yabA 3732..4091 (+) 360 WP_013350748.1 replication initiation-control protein YabA -
  PF976_RS00040 (PF976_00040) - 4152..4895 (+) 744 WP_013350749.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  PF976_RS00045 (PF976_00045) - 4882..5181 (+) 300 WP_013350750.1 GIY-YIG nuclease family protein -
  PF976_RS00050 (PF976_00050) rsmI 5156..6037 (+) 882 WP_013350751.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  PF976_RS00055 (PF976_00055) abrB 6087..6377 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  PF976_RS00060 (PF976_00060) metG 6860..8851 (+) 1992 WP_014469597.1 methionine--tRNA ligase -
  PF976_RS00065 (PF976_00065) - 8928..9695 (+) 768 WP_014469598.1 TatD family hydrolase -
  PF976_RS00070 (PF976_00070) - 9830..11149 (+) 1320 WP_014471348.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=775000 PF976_RS00055 WP_169510469.1 6087..6377(-) (abrB) [Bacillus amyloliquefaciens strain SRCM124317]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=775000 PF976_RS00055 WP_169510469.1 6087..6377(-) (abrB) [Bacillus amyloliquefaciens strain SRCM124317]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTCTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979