Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   PF975_RS19595 Genome accession   NZ_CP116010
Coordinates   3982077..3982367 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM123815     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3977077..3987367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF975_RS19580 (PF975_19580) - 3977299..3978624 (-) 1326 WP_014720609.1 G5 and 3D domain-containing protein -
  PF975_RS19585 (PF975_19585) - 3978759..3979526 (-) 768 WP_032864028.1 TatD family hydrolase -
  PF975_RS19590 (PF975_19590) metG 3979603..3981594 (-) 1992 WP_014416719.1 methionine--tRNA ligase -
  PF975_RS19595 (PF975_19595) abrB 3982077..3982367 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  PF975_RS19600 (PF975_19600) rsmI 3982416..3983297 (-) 882 WP_014416718.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  PF975_RS19605 (PF975_19605) - 3983272..3983571 (-) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  PF975_RS19610 (PF975_19610) - 3983558..3984301 (-) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  PF975_RS19615 (PF975_19615) yabA 3984362..3984721 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  PF975_RS19620 (PF975_19620) ricT 3984736..3985563 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  PF975_RS19625 (PF975_19625) holB 3985566..3986555 (-) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  PF975_RS19630 (PF975_19630) - 3986567..3987007 (-) 441 WP_004264730.1 YaaR family protein -
  PF975_RS19635 (PF975_19635) darA 3987020..3987349 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=774997 PF975_RS19595 WP_169510469.1 3982077..3982367(+) (abrB) [Bacillus velezensis strain SRCM123815]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=774997 PF975_RS19595 WP_169510469.1 3982077..3982367(+) (abrB) [Bacillus velezensis strain SRCM123815]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979