Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   PF975_RS15565 Genome accession   NZ_CP116010
Coordinates   3174464..3175255 (-) Length   263 a.a.
NCBI ID   WP_053285207.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM123815     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 3169464..3180255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF975_RS15525 (PF975_15525) - 3169731..3170066 (-) 336 WP_053285204.1 SdpI family protein -
  PF975_RS15530 (PF975_15530) - 3170152..3170679 (-) 528 WP_053285205.1 SH3 domain-containing protein -
  PF975_RS15535 (PF975_15535) - 3170811..3171080 (-) 270 WP_003155492.1 YfhJ family protein -
  PF975_RS15540 (PF975_15540) - 3171204..3171356 (+) 153 WP_003155495.1 small, acid-soluble spore protein K -
  PF975_RS15545 (PF975_15545) - 3171501..3172412 (+) 912 WP_029973980.1 trypsin-like serine peptidase -
  PF975_RS15550 (PF975_15550) - 3172375..3172764 (+) 390 WP_053285206.1 DUF2606 family protein -
  PF975_RS15555 (PF975_15555) - 3172804..3173997 (-) 1194 WP_025284446.1 MFS transporter -
  PF975_RS15560 (PF975_15560) - 3174143..3174457 (-) 315 WP_007408553.1 YfhH family protein -
  PF975_RS15565 (PF975_15565) recX 3174464..3175255 (-) 792 WP_053285207.1 recombination regulator RecX Regulator
  PF975_RS15570 (PF975_15570) - 3175347..3176246 (+) 900 WP_088056265.1 TIGR01777 family oxidoreductase -
  PF975_RS15575 (PF975_15575) - 3176304..3176414 (+) 111 WP_003155504.1 YfhE family protein -
  PF975_RS15580 (PF975_15580) - 3176485..3176676 (+) 192 WP_003155508.1 YfhD family protein -
  PF975_RS15585 (PF975_15585) - 3176717..3177301 (-) 585 WP_007408549.1 nitroreductase -
  PF975_RS15590 (PF975_15590) - 3177378..3178262 (-) 885 WP_014417233.1 PhzF family phenazine biosynthesis isomerase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30909.07 Da        Isoelectric Point: 6.0196

>NTDB_id=774987 PF975_RS15565 WP_053285207.1 3174464..3175255(-) (recX) [Bacillus velezensis strain SRCM123815]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQHGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYSYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=774987 PF975_RS15565 WP_053285207.1 3174464..3175255(-) (recX) [Bacillus velezensis strain SRCM123815]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAAAAAGGGAAAGAACTCGACGAGCTTGACATTCTTGAAATCC
AGCACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACACCGGATATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACAGCTACTT
AAATGACAAAGAATTTGCGGAAGCTTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGCGCGTTTACATTTGATGAGCAAATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTCAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAACAGACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGCTATGACGGCAGTTATGAAAGCGGAATGAAG
GTCAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.087

100

0.791