Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   PF975_RS12525 Genome accession   NZ_CP116010
Coordinates   2624166..2624450 (-) Length   94 a.a.
NCBI ID   WP_014417633.1    Uniprot ID   I2C4H1
Organism   Bacillus velezensis strain SRCM123815     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2619166..2629450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF975_RS12505 (PF975_12505) ade 2619272..2621005 (-) 1734 WP_053285007.1 adenine deaminase -
  PF975_RS12510 (PF975_12510) ktrC 2621154..2621819 (-) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  PF975_RS12515 (PF975_12515) - 2621860..2622687 (-) 828 WP_014417635.1 gamma-glutamylcyclotransferase -
  PF975_RS12520 (PF975_12520) - 2622689..2623993 (-) 1305 WP_014417634.1 ATP-binding protein -
  PF975_RS12525 (PF975_12525) abrB 2624166..2624450 (-) 285 WP_014417633.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  PF975_RS12530 (PF975_12530) mreBH 2624721..2625728 (+) 1008 WP_014417632.1 cell shape-determining protein MreBH -
  PF975_RS12535 (PF975_12535) - 2625800..2625934 (+) 135 WP_003154559.1 protein YkpC -
  PF975_RS12540 (PF975_12540) - 2626035..2627267 (+) 1233 WP_007409644.1 aminopeptidase -
  PF975_RS12545 (PF975_12545) - 2627298..2628206 (-) 909 WP_014417631.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10516.38 Da        Isoelectric Point: 5.8979

>NTDB_id=774969 PF975_RS12525 WP_014417633.1 2624166..2624450(-) (abrB) [Bacillus velezensis strain SRCM123815]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKGRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=774969 PF975_RS12525 WP_014417633.1 2624166..2624450(-) (abrB) [Bacillus velezensis strain SRCM123815]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGGTAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C4H1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543