Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   PF975_RS09175 Genome accession   NZ_CP116010
Coordinates   1828424..1829032 (-) Length   202 a.a.
NCBI ID   WP_014418235.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM123815     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1823424..1834032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF975_RS09155 (PF975_09155) dnaD 1823660..1824358 (+) 699 WP_003153516.1 DNA replication protein DnaD -
  PF975_RS09160 (PF975_09160) nth 1824377..1825036 (+) 660 WP_007612187.1 endonuclease III -
  PF975_RS09165 (PF975_09165) - 1825033..1825524 (+) 492 WP_022553044.1 YpoC family protein -
  PF975_RS09170 (PF975_09170) - 1825602..1828385 (-) 2784 WP_053284888.1 PBP1A family penicillin-binding protein -
  PF975_RS09175 (PF975_09175) recU 1828424..1829032 (-) 609 WP_014418235.1 Holliday junction resolvase RecU Machinery gene
  PF975_RS09180 (PF975_09180) - 1829074..1830036 (+) 963 WP_014418234.1 DUF2515 domain-containing protein -
  PF975_RS09185 (PF975_09185) sspM 1830080..1830184 (-) 105 WP_003153525.1 acid-soluble spore protein SspM -
  PF975_RS09190 (PF975_09190) - 1830390..1830635 (+) 246 WP_014418233.1 DUF5446 family protein -
  PF975_RS09195 (PF975_09195) - 1830681..1831049 (+) 369 WP_014418232.1 YppE family protein -
  PF975_RS09200 (PF975_09200) - 1831088..1831270 (-) 183 WP_003153532.1 YppF family protein -
  PF975_RS09205 (PF975_09205) - 1831457..1831924 (+) 468 WP_014418231.1 YppG family protein -
  PF975_RS09210 (PF975_09210) - 1831954..1832367 (-) 414 WP_007612169.1 Hsp20/alpha crystallin family protein -
  PF975_RS09215 (PF975_09215) - 1832506..1833012 (+) 507 WP_012117833.1 PTS sugar transporter subunit IIA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23680.82 Da        Isoelectric Point: 9.6872

>NTDB_id=774964 PF975_RS09175 WP_014418235.1 1828424..1829032(-) (recU) [Bacillus velezensis strain SRCM123815]
MIRYPNGKTFQPNKTVSSQNSQKRTHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWDRKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=774964 PF975_RS09175 WP_014418235.1 1828424..1829032(-) (recU) [Bacillus velezensis strain SRCM123815]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGACCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGACAGAAAGGAG
AAGAACGGCAGAAAATCGATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

91.457

98.515

0.901