Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   PF975_RS01885 Genome accession   NZ_CP116010
Coordinates   369290..370435 (-) Length   381 a.a.
NCBI ID   WP_088056392.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM123815     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 364290..375435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF975_RS01840 (PF975_01840) speE 364602..365432 (+) 831 WP_003151052.1 spermidine synthase -
  PF975_RS01845 (PF975_01845) speB 365491..366363 (+) 873 WP_053285340.1 agmatinase -
  PF975_RS01850 (PF975_01850) - 366516..366734 (+) 219 WP_003151056.1 helix-turn-helix transcriptional regulator -
  PF975_RS01855 (PF975_01855) - 367325..367837 (-) 513 WP_031304384.1 stage II sporulation protein M -
  PF975_RS01860 (PF975_01860) - 367881..368162 (-) 282 WP_007407643.1 hypothetical protein -
  PF975_RS01865 (PF975_01865) - 368349..368534 (-) 186 WP_007407642.1 DUF4177 domain-containing protein -
  PF975_RS01870 (PF975_01870) - 368569..368772 (-) 204 WP_007407641.1 hypothetical protein -
  PF975_RS01875 (PF975_01875) - 368786..368989 (-) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  PF975_RS01880 (PF975_01880) - 369187..369306 (-) 120 WP_021494790.1 PhrC/PhrF family phosphatase-inhibitory pheromone -
  PF975_RS01885 (PF975_01885) rapF 369290..370435 (-) 1146 WP_088056392.1 tetratricopeptide repeat protein Regulator
  PF975_RS01890 (PF975_01890) - 370727..371155 (+) 429 WP_014419128.1 DUF1934 domain-containing protein -
  PF975_RS01895 (PF975_01895) argS 371152..372822 (+) 1671 WP_007407633.1 arginine--tRNA ligase -
  PF975_RS01900 (PF975_01900) narK 372956..374146 (+) 1191 WP_007407632.1 nitrate transporter NarK -
  PF975_RS01905 (PF975_01905) - 374244..374960 (+) 717 WP_014419126.1 Crp/Fnr family transcriptional regulator -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45597.65 Da        Isoelectric Point: 4.5797

>NTDB_id=774930 PF975_RS01885 WP_088056392.1 369290..370435(-) (rapF) [Bacillus velezensis strain SRCM123815]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSELLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKSYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNTAIARQYHDKGVSYAEEAEDSLYIVEYEFLESLYVGEPDEEAI
MECFDFLRDKLMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=774930 PF975_RS01885 WP_088056392.1 369290..370435(-) (rapF) [Bacillus velezensis strain SRCM123815]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGCCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGAGCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAGCAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAATCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGACTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATACGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATAGTCGAGTATGAATTTTTAGAATCTTTATATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATTGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(189-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

77.953

100

0.78
  rapC Bacillus subtilis subsp. subtilis str. 168

56.842

99.738

0.567