Detailed information NTG0774925

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OR232_RS06085
• Genome accession: NZ_CP128596
• Coordinates: 1252439..1253431 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain muskdeer13-4
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1247439..1258431

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OR232_RS06055 (OR232_006055)	ispD	1247500..1248210 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
OR232_RS06060 (OR232_006060)	ispF	1248210..1248689 (+)	480	WP_001219238.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OR232_RS06065 (OR232_006065)	truD	1248686..1249735 (+)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
OR232_RS06070 (OR232_006070)	surE	1249716..1250477 (+)	762	WP_001350156.1	5'/3'-nucleotidase SurE	-
OR232_RS06075 (OR232_006075)	pcm	1250471..1251097 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
OR232_RS06080 (OR232_006080)	nlpD	1251282..1252376 (+)	1095	WP_306217602.1	murein hydrolase activator NlpD	-
OR232_RS06085 (OR232_006085)	rpoS	1252439..1253431 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
OR232_RS06090 (OR232_006090)	-	1253602..1254153 (-)	552	WP_001179443.1	flavodoxin family protein	-
OR232_RS06095 (OR232_006095)	-	1254378..1255421 (+)	1044	Protein_1202	MBL fold metallo-hydrolase	-
OR232_RS06100 (OR232_006100)	ygbN	1255564..1256928 (-)	1365	WP_000104433.1	GntP family transporter	-
OR232_RS06105 (OR232_006105)	ygbM	1257017..1257793 (-)	777	WP_001136915.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=774925 OR232_RS06085 WP_000081550.1 1252439..1253431(+) (rpoS) [Escherichia coli strain muskdeer13-4]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=774925 OR232_RS06085 WP_000081550.1 1252439..1253431(+) (rpoS) [Escherichia coli strain muskdeer13-4]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715