Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   PE066_RS10160 Genome accession   NZ_CP116009
Coordinates   2168664..2170196 (-) Length   510 a.a.
NCBI ID   WP_271236417.1    Uniprot ID   -
Organism   Ramlibacter tataouinensis strain DMF-7     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2163664..2175196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PE066_RS10130 (PE066_10130) - 2164605..2165105 (+) 501 WP_271236412.1 thermonuclease family protein -
  PE066_RS10135 (PE066_10135) - 2165142..2165699 (+) 558 WP_271236413.1 phosphatidylglycerophosphatase A -
  PE066_RS10140 (PE066_10140) - 2165684..2166172 (+) 489 WP_271236414.1 CinA family protein -
  PE066_RS10145 (PE066_10145) - 2166216..2167037 (+) 822 WP_271236553.1 oxaloacetate decarboxylase -
  PE066_RS10150 (PE066_10150) - 2166983..2167444 (-) 462 WP_336298457.1 putative toxin-antitoxin system toxin component, PIN family -
  PE066_RS10155 (PE066_10155) - 2167437..2168660 (-) 1224 WP_271236416.1 class I SAM-dependent RNA methyltransferase -
  PE066_RS10160 (PE066_10160) rpoN/rpoN1 2168664..2170196 (-) 1533 WP_271236417.1 RNA polymerase factor sigma-54 Machinery gene
  PE066_RS10165 (PE066_10165) lptB 2170219..2171007 (-) 789 WP_271236554.1 LPS export ABC transporter ATP-binding protein -
  PE066_RS10170 (PE066_10170) lptA 2171010..2171621 (-) 612 WP_271236418.1 lipopolysaccharide transport periplasmic protein LptA -
  PE066_RS10175 (PE066_10175) - 2171732..2172382 (-) 651 WP_271236419.1 thiol:disulfide interchange protein DsbA/DsbL -
  PE066_RS10180 (PE066_10180) - 2172448..2173053 (-) 606 WP_271236420.1 SPOR domain-containing protein -
  PE066_RS10185 (PE066_10185) argS 2173062..2174735 (-) 1674 WP_271236421.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 55915.36 Da        Isoelectric Point: 4.9418

>NTDB_id=774911 PE066_RS10160 WP_271236417.1 2168664..2170196(-) (rpoN/rpoN1) [Ramlibacter tataouinensis strain DMF-7]
MKQGLSLRVSQHLALTPQLQQSIRLLQLSTLELAQEVEQMLGDNPFLEVAPEEAPREEFGIAQADTPPPATEREEAAYEA
AALDAAPVGDAETAQPHDWDGDGSIELVPDDGEWGGEAPARRNDAGGEDGGDAIELARRHESLQDHLHRQALLLRLAPED
QAALRFLIESLDDDGYLEDPPEALAAALAPGDLPQQEELVHRFTVALRLLQHLDPPGVGARSLAECLQLQLQARRGEIAD
PEACDAALALCAQPMDLLARRDVRRLAQLCGLSEAQVKAGIALVTRLEPKPGRRFADVERNIVVPDVLVSPAAAGSPFRF
RVQLNPDVLPRLRVHDAYAGALKAHRGEGHQALQQRLQEARWFIRNIQQRFDTILRVSTAIVERQKNFFVHGELAMRPLV
LREIADELGLHESTISRVTTAKYMATPLGTFELKYFFGSALGTETGGNASSTAVRALIRQLVAAEDAARPLSDSRISDML
KEQGIECARRTVAKYREALRIAPANLRKAL

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=774911 PE066_RS10160 WP_271236417.1 2168664..2170196(-) (rpoN/rpoN1) [Ramlibacter tataouinensis strain DMF-7]
ATGAAGCAGGGGCTGTCGCTTCGGGTCTCGCAGCACCTCGCGCTGACGCCGCAGCTGCAGCAGTCGATCCGCCTGCTGCA
GCTTTCCACGCTCGAGCTGGCCCAGGAGGTCGAGCAGATGCTCGGCGACAACCCGTTCCTCGAAGTCGCGCCCGAGGAGG
CGCCGCGCGAGGAATTCGGGATCGCGCAGGCCGACACCCCGCCACCGGCGACCGAGCGCGAAGAGGCGGCGTACGAGGCC
GCCGCGCTGGATGCCGCGCCGGTCGGCGACGCGGAGACGGCGCAACCGCACGACTGGGATGGCGACGGCAGCATCGAGCT
GGTGCCCGACGATGGCGAGTGGGGTGGCGAGGCGCCCGCGCGCCGCAATGATGCTGGCGGCGAGGACGGCGGCGACGCGA
TCGAGCTGGCGCGCCGGCACGAGTCGCTGCAGGACCACCTGCACCGGCAGGCGCTGCTGCTGCGGCTGGCGCCGGAGGAC
CAGGCGGCGCTGCGCTTCCTGATCGAGTCGCTCGACGATGACGGCTACCTGGAGGATCCGCCCGAAGCCCTGGCCGCGGC
CCTGGCGCCCGGCGACCTGCCGCAGCAGGAAGAGCTGGTCCACCGCTTCACGGTGGCGCTGCGCCTGCTGCAGCACCTCG
ATCCACCCGGCGTGGGTGCCCGTTCGCTGGCCGAATGCCTGCAGCTGCAACTGCAGGCCCGGCGCGGCGAGATCGCCGAC
CCCGAGGCCTGCGATGCCGCGCTGGCGCTCTGCGCCCAGCCGATGGACCTGCTGGCGCGGCGCGACGTCCGGCGCCTGGC
GCAGTTGTGCGGTCTGTCCGAGGCACAGGTCAAGGCCGGCATCGCGCTGGTCACCCGGCTCGAACCCAAGCCGGGCCGCC
GCTTCGCCGACGTCGAGCGCAACATCGTGGTGCCCGACGTGCTGGTCAGCCCGGCCGCGGCCGGCAGCCCGTTCCGCTTC
CGGGTGCAGCTCAACCCCGACGTGCTGCCGCGCCTGCGGGTGCACGACGCCTATGCCGGCGCGCTCAAGGCCCATCGCGG
CGAGGGCCACCAGGCGCTGCAGCAGCGGCTGCAGGAGGCGCGCTGGTTCATCCGGAACATCCAGCAGCGCTTCGACACCA
TCCTGCGGGTGTCCACCGCGATCGTCGAGCGGCAGAAGAACTTCTTCGTGCACGGCGAACTGGCCATGCGCCCGCTGGTG
CTGCGCGAGATCGCCGACGAGCTGGGGCTGCACGAATCCACCATCTCGCGCGTGACCACCGCCAAGTACATGGCCACCCC
GCTGGGCACCTTCGAGCTCAAGTACTTCTTCGGCTCCGCCCTGGGCACCGAGACCGGCGGCAACGCTTCGTCGACGGCGG
TGCGGGCCCTGATCCGGCAGCTGGTGGCCGCCGAGGACGCCGCCCGGCCGCTGTCGGACAGCCGCATTTCGGACATGCTC
AAGGAGCAGGGCATCGAGTGCGCGCGCCGTACGGTGGCCAAGTACCGCGAGGCGCTGCGAATCGCGCCCGCCAACCTGCG
CAAGGCGCTGTAA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(135-338)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-49)

Sigma-54, DNA binding domain (Sigma54_DBD)

(352-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

52.885

100

0.539