Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PE065_RS09780 Genome accession   NZ_CP116008
Coordinates   2141467..2142576 (-) Length   369 a.a.
NCBI ID   WP_271248957.1    Uniprot ID   -
Organism   Chryseobacterium gambrini strain DMF-6     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2136467..2147576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PE065_RS09750 (PE065_09750) - 2136779..2136991 (+) 213 WP_271248720.1 hypothetical protein -
  PE065_RS09755 (PE065_09755) - 2137059..2138030 (+) 972 WP_076393992.1 ion channel -
  PE065_RS09760 (PE065_09760) - 2138031..2138519 (+) 489 WP_108410204.1 YkgJ family cysteine cluster protein -
  PE065_RS09765 (PE065_09765) - 2138636..2138980 (+) 345 WP_271248721.1 hypothetical protein -
  PE065_RS09770 (PE065_09770) - 2139195..2139560 (-) 366 WP_271248722.1 iron chaperone -
  PE065_RS09775 (PE065_09775) gdhA 2139918..2141276 (-) 1359 WP_076394000.1 NADP-specific glutamate dehydrogenase -
  PE065_RS09780 (PE065_09780) dprA 2141467..2142576 (-) 1110 WP_271248957.1 DNA-processing protein DprA Machinery gene
  PE065_RS09785 (PE065_09785) - 2142613..2143383 (-) 771 WP_256039608.1 rhomboid family intramembrane serine protease -
  PE065_RS09790 (PE065_09790) - 2143655..2144584 (+) 930 WP_271248723.1 DUF3078 domain-containing protein -
  PE065_RS09795 (PE065_09795) - 2144830..2145339 (+) 510 WP_271248724.1 hypothetical protein -
  PE065_RS09800 (PE065_09800) - 2145336..2145683 (+) 348 WP_271248725.1 tRNA-binding protein -
  PE065_RS09805 (PE065_09805) - 2145758..2146462 (+) 705 WP_116099060.1 3'-5' exonuclease -
  PE065_RS09810 (PE065_09810) - 2146466..2146792 (+) 327 WP_271248726.1 SUF system Fe-S cluster assembly protein -
  PE065_RS09815 (PE065_09815) - 2146953..2147342 (+) 390 WP_271248727.1 hypothetical protein -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 41224.87 Da        Isoelectric Point: 7.1343

>NTDB_id=774897 PE065_RS09780 WP_271248957.1 2141467..2142576(-) (dprA) [Chryseobacterium gambrini strain DMF-6]
MYSEEHLYSIALRECNLIGDINFYKLVRTFGSAKNAWENTKKEYKKLDGFGSKMISDIGNPAHLKFAENELKFCEANHIK
INLRHLHDLPKLLNECDDAPVILYQKGNYDGSKQKVSMVGTRNMTSYGKQFIEEFFQESSSGNFISVSGLALGVDKEVHE
QSILHQVSTVAVLAHGFHTLYPSKNKKLSEKILEEGGVLFTEFNSSRKPDRENFIQRNRIVAGISPATIVVETAFGGGSI
STATYANLYNREVYALPGKITDKQSQGCNHLIFQNKASAISTIKDLVENLGFNHPKGRTGELFPHSEISIQLTENQSEIF
RIIDENPQISLDDLADKTALASHKILPVILELELLGKVKSLSGRQFLAT

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=774897 PE065_RS09780 WP_271248957.1 2141467..2142576(-) (dprA) [Chryseobacterium gambrini strain DMF-6]
ATGTATTCTGAAGAACATCTTTATTCTATCGCTCTGCGCGAGTGTAATTTAATCGGGGATATCAATTTTTATAAGCTTGT
CCGTACTTTCGGAAGTGCCAAGAACGCTTGGGAAAACACCAAAAAGGAATACAAAAAGCTGGATGGATTCGGATCTAAAA
TGATTTCAGATATCGGAAATCCTGCTCATCTGAAGTTTGCTGAAAATGAACTGAAGTTTTGTGAGGCAAACCATATCAAA
ATTAATCTCAGACATCTTCATGATCTTCCCAAACTCTTAAACGAATGCGATGATGCTCCTGTAATTCTCTATCAGAAAGG
GAATTATGACGGTTCTAAGCAAAAAGTAAGCATGGTAGGAACAAGAAATATGACTTCCTACGGAAAGCAGTTTATTGAAG
AGTTTTTTCAGGAATCGTCTTCCGGTAATTTTATTTCGGTGAGCGGTCTGGCTTTAGGCGTCGATAAAGAAGTTCATGAG
CAGTCTATTCTTCATCAGGTTTCTACGGTTGCCGTTTTAGCCCATGGTTTTCACACATTGTATCCTTCAAAAAACAAAAA
ATTATCAGAAAAAATTCTTGAGGAAGGAGGGGTGTTATTTACAGAATTCAATTCTTCAAGAAAGCCGGATCGTGAAAATT
TCATCCAGAGAAACAGAATCGTAGCCGGAATTTCTCCTGCGACAATTGTGGTGGAAACTGCTTTTGGCGGAGGTTCAATC
AGCACGGCAACTTATGCAAATCTGTATAACCGTGAAGTGTATGCGCTTCCGGGAAAAATTACTGACAAGCAGAGCCAGGG
CTGTAATCATCTGATTTTTCAGAACAAAGCTTCGGCAATTTCCACGATAAAAGATCTGGTTGAAAACTTAGGATTTAATC
ATCCGAAGGGAAGAACTGGAGAATTATTTCCTCACAGTGAAATTTCAATCCAATTAACTGAAAATCAAAGTGAAATATTC
AGAATAATAGATGAGAATCCGCAGATATCTCTGGATGATCTTGCCGATAAAACAGCACTTGCCTCACACAAAATTTTACC
GGTAATTTTAGAATTGGAACTTTTGGGGAAGGTAAAATCACTTTCGGGGAGACAATTTTTAGCAACCTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(310-363)

DNA recombination-mediator protein A (DNA_processg_A)

(74-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Riemerella anatipestifer ATCC 11845 = DSM 15868

54.396

98.645

0.537