Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PE065_RS06570 Genome accession   NZ_CP116008
Coordinates   1449189..1450541 (+) Length   450 a.a.
NCBI ID   WP_076390791.1    Uniprot ID   A0A202C7Z1
Organism   Chryseobacterium gambrini strain DMF-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1444189..1455541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PE065_RS06550 (PE065_06550) - 1445891..1447498 (-) 1608 WP_268055128.1 CTP synthase -
  PE065_RS06555 (PE065_06555) - 1447595..1448020 (+) 426 WP_256040118.1 hypothetical protein -
  PE065_RS06560 (PE065_06560) - 1448085..1448654 (-) 570 WP_256040117.1 YceI family protein -
  PE065_RS06565 (PE065_06565) - 1448710..1449129 (-) 420 WP_271248300.1 hypothetical protein -
  PE065_RS06570 (PE065_06570) radA 1449189..1450541 (+) 1353 WP_076390791.1 DNA repair protein RadA Machinery gene
  PE065_RS06575 (PE065_06575) - 1450565..1451233 (+) 669 WP_271248301.1 class I SAM-dependent methyltransferase -
  PE065_RS06580 (PE065_06580) - 1451230..1451937 (+) 708 WP_271248302.1 VanW family protein -
  PE065_RS06585 (PE065_06585) - 1451934..1452527 (+) 594 WP_271248303.1 ACP phosphodiesterase -
  PE065_RS06590 (PE065_06590) - 1452531..1453031 (-) 501 WP_108409194.1 DUF6702 family protein -
  PE065_RS06595 (PE065_06595) - 1453028..1453330 (-) 303 WP_108409193.1 hypothetical protein -
  PE065_RS06600 (PE065_06600) - 1453306..1453548 (-) 243 WP_256040111.1 hypothetical protein -
  PE065_RS06605 (PE065_06605) - 1453582..1453884 (-) 303 WP_271248304.1 hypothetical protein -
  PE065_RS06610 (PE065_06610) - 1453860..1454111 (-) 252 WP_256040110.1 hypothetical protein -
  PE065_RS06615 (PE065_06615) - 1454181..1454759 (+) 579 WP_271248305.1 HupE/UreJ family protein -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 50031.61 Da        Isoelectric Point: 6.6946

>NTDB_id=774894 PE065_RS06570 WP_076390791.1 1449189..1450541(+) (radA) [Chryseobacterium gambrini strain DMF-6]
MAKLKTAYFCQNCGTQYSQWMGQCKNCGQWNTLVEEVVEKTTSHKTPPFSKTKQHVINIVEVETNEEPRIKTPSEELNRV
LGGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKVFYVSGEESASQIKMRADRLTDIQNPNCFLFTETNLEKILHEAKK
LEPDFVIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKYAKENNVPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRN
HLFRLLRANKNRFGSTSEIGIYEMISQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQR
SSTGFDAKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVVASILSSNEDIAISEHYCFAGEIGLSGEIRP
IAQAEQRITEAEKLGYEKIFISNLNKLPKKKFGIKIEEVSKIEDFHERLF

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=774894 PE065_RS06570 WP_076390791.1 1449189..1450541(+) (radA) [Chryseobacterium gambrini strain DMF-6]
ATGGCAAAACTCAAAACAGCATATTTCTGTCAGAACTGCGGAACACAATATTCCCAATGGATGGGACAGTGCAAAAACTG
CGGACAGTGGAATACCTTGGTGGAAGAAGTGGTGGAAAAAACAACTTCACACAAGACTCCGCCTTTTTCAAAAACAAAAC
AGCACGTCATCAATATCGTAGAAGTTGAAACCAATGAAGAACCGAGAATAAAAACACCTTCCGAAGAGCTCAACCGGGTT
TTGGGAGGCGGAATTGTTTTAGGATCTGTTACGCTGATCGGTGGAGAACCGGGAATCGGTAAGTCTACCCTGCTCCTTCA
ATTAGCTCTGAAAATGAAGAAAAAAGTTTTCTATGTTTCGGGGGAAGAAAGTGCTTCTCAAATTAAAATGAGAGCCGACC
GTCTGACTGATATCCAAAATCCCAACTGTTTTCTTTTTACAGAAACCAATCTGGAAAAAATTCTTCATGAAGCTAAAAAA
CTGGAGCCCGACTTTGTGATTATCGATTCCATTCAGACATTGCAGTCACAACTGATTGAAAGTTCGCCGGGAACGGTTTC
CCAGATCCGCGAATGCTCCAATGAGATTATTAAATACGCCAAAGAAAACAACGTTCCTGTATTTTTGGTAGGTCACATCA
CCAAAGACGGACAAATTGCCGGACCAAAAGTTCTGGAACACATGGTTGATGTAGTTTTAAATTTCGATGGCGACAGAAAC
CACCTTTTCAGATTATTGAGAGCCAACAAAAACCGTTTCGGATCGACTTCCGAGATTGGGATTTATGAAATGATTTCTCA
GGGTTTAAAGGAAATTAAAAATCCGTCCGAAATTTTAATCACCAAAAAATTTGAAGAACTTTCCGGAAATTCGGTGGCGG
TAACTTTGGAAGGAAACCGTCCGATGCTGTTGGAAATTCAGGCTTTGGTAAGTACCGCAGTTTACGGAACACCGCAAAGA
AGTTCCACAGGTTTTGATGCCAAAAGATTGAATATGCTTCTTGCAGTTCTGGAAAAAAGAGCAGGTTTTCAACTCGGAGC
AAAAGACGTTTTCTTAAATATTACCGGAGGAATTAAAACCGATGATCCGGCTTTAGATTTAGCGGTTGTCGCTTCCATTC
TTTCATCCAATGAAGATATTGCCATTTCCGAACATTATTGTTTTGCGGGAGAAATTGGTTTAAGTGGTGAAATCCGTCCG
ATTGCACAGGCGGAACAAAGAATTACCGAGGCGGAAAAATTGGGCTACGAAAAAATATTCATTTCTAATTTAAATAAACT
TCCGAAGAAAAAATTCGGGATTAAAATTGAAGAGGTAAGCAAAATTGAGGATTTTCATGAAAGATTATTTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-218)

Subunit ChlI of Mg-chelatase (ChlI)

(339-423)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A202C7Z1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.336

100

0.496
  radA Streptococcus mitis NCTC 12261

48.026

100

0.487
  radA Streptococcus pneumoniae D39

47.807

100

0.484
  radA Streptococcus pneumoniae TIGR4

47.807

100

0.484
  radA Streptococcus pneumoniae R6

47.807

100

0.484
  radA Streptococcus pneumoniae Rx1

47.807

100

0.484
  radA Streptococcus mitis SK321

49.882

94

0.469