Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QUR99_RS17190 Genome accession   NZ_CP128594
Coordinates   3421164..3421769 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain VG1046-3E9     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3416164..3426769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUR99_RS17170 (QUR99_17170) aes 3416201..3417160 (+) 960 WP_000801850.1 acetyl esterase -
  QUR99_RS17175 (QUR99_17175) hemH 3417157..3418119 (-) 963 WP_001250088.1 ferrochelatase -
  QUR99_RS17180 (QUR99_17180) adk 3418355..3418999 (-) 645 WP_001220233.1 adenylate kinase -
  QUR99_RS17185 (QUR99_17185) htpG 3419180..3421054 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  QUR99_RS17190 (QUR99_17190) recR 3421164..3421769 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QUR99_RS17195 (QUR99_17195) ybaB 3421769..3422098 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QUR99_RS17200 (QUR99_17200) dnaX 3422151..3424082 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  QUR99_RS17205 (QUR99_17205) apt 3424211..3424762 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QUR99_RS17210 (QUR99_17210) ybaN 3424915..3425292 (-) 378 WP_001188905.1 DUF454 family protein -
  QUR99_RS17215 (QUR99_17215) priC 3425362..3425889 (+) 528 WP_000844876.1 primosomal replication protein N'' -
  QUR99_RS17220 (QUR99_17220) rsmS 3425903..3426064 (+) 162 WP_001543543.1 pleiotropic regulatory protein RsmS -
  QUR99_RS17225 (QUR99_17225) - 3426117..3426215 (-) 99 Protein_3246 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=774872 QUR99_RS17190 WP_001195025.1 3421164..3421769(-) (recR) [Escherichia coli strain VG1046-3E9]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=774872 QUR99_RS17190 WP_001195025.1 3421164..3421769(-) (recR) [Escherichia coli strain VG1046-3E9]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443