Detailed information NTG0774840

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QUR99_RS05830
• Genome accession: NZ_CP128594
• Coordinates: 1071209..1072201 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain VG1046-3E9
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1066209..1077201

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QUR99_RS05800 (QUR99_05800)	ispD	1066270..1066980 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QUR99_RS05805 (QUR99_05805)	ispF	1066980..1067459 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QUR99_RS05810 (QUR99_05810)	truD	1067456..1068505 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
QUR99_RS05815 (QUR99_05815)	surE	1068486..1069247 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QUR99_RS05820 (QUR99_05820)	pcm	1069241..1069867 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QUR99_RS05825 (QUR99_05825)	nlpD	1070052..1071146 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QUR99_RS05830 (QUR99_05830)	rpoS	1071209..1072201 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QUR99_RS05835 (QUR99_05835)	ygbN	1072295..1073659 (-)	1365	WP_000104441.1	GntP family transporter	-
QUR99_RS05840 (QUR99_05840)	ygbM	1073748..1074524 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
QUR99_RS05845 (QUR99_05845)	ygbL	1074529..1075167 (-)	639	WP_001278994.1	aldolase	-
QUR99_RS05850 (QUR99_05850)	otnK	1075164..1076426 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=774840 QUR99_RS05830 WP_000081550.1 1071209..1072201(+) (rpoS) [Escherichia coli strain VG1046-3E9]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=774840 QUR99_RS05830 WP_000081550.1 1071209..1072201(+) (rpoS) [Escherichia coli strain VG1046-3E9]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715