Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QUS04_RS18195 Genome accession   NZ_CP128592
Coordinates   3483341..3483946 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain VG12A2     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3478341..3488946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUS04_RS18175 (QUS04_18175) aes 3478378..3479337 (+) 960 WP_000801832.1 acetyl esterase -
  QUS04_RS18180 (QUS04_18180) hemH 3479334..3480296 (-) 963 WP_001250097.1 ferrochelatase -
  QUS04_RS18185 (QUS04_18185) adk 3480532..3481176 (-) 645 WP_001220233.1 adenylate kinase -
  QUS04_RS18190 (QUS04_18190) htpG 3481357..3483231 (-) 1875 WP_000678208.1 molecular chaperone HtpG -
  QUS04_RS18195 (QUS04_18195) recR 3483341..3483946 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QUS04_RS18200 (QUS04_18200) ybaB 3483946..3484275 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QUS04_RS18205 (QUS04_18205) dnaX 3484328..3486259 (-) 1932 WP_000122018.1 DNA polymerase III subunit gamma/tau -
  QUS04_RS18210 (QUS04_18210) apt 3486388..3486939 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QUS04_RS18215 (QUS04_18215) ybaN 3487092..3487469 (-) 378 WP_001188905.1 DUF454 family protein -
  QUS04_RS18220 (QUS04_18220) priC 3487539..3488066 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  QUS04_RS18225 (QUS04_18225) rsmS 3488080..3488241 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  QUS04_RS18230 (QUS04_18230) - 3488294..3488392 (-) 99 Protein_3368 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=774791 QUS04_RS18195 WP_001195025.1 3483341..3483946(-) (recR) [Escherichia coli strain VG12A2]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=774791 QUS04_RS18195 WP_001195025.1 3483341..3483946(-) (recR) [Escherichia coli strain VG12A2]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443