Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   PE051_RS21245 Genome accession   NZ_CP115980
Coordinates   4384975..4386408 (+) Length   477 a.a.
NCBI ID   WP_198886068.1    Uniprot ID   -
Organism   Enterobacter asburiae strain WUM-UW/843     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4379975..4391408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PE051_RS21215 (PE051_21175) - 4380542..4381519 (+) 978 WP_023309354.1 calcium/sodium antiporter -
  PE051_RS21220 (PE051_21180) kdsD 4381533..4382519 (+) 987 WP_334753554.1 arabinose-5-phosphate isomerase KdsD -
  PE051_RS21225 (PE051_21185) kdsC 4382534..4383100 (+) 567 WP_023309356.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  PE051_RS21230 (PE051_21190) lptC 4383097..4383672 (+) 576 WP_033146749.1 LPS export ABC transporter periplasmic protein LptC -
  PE051_RS21235 (PE051_21195) lptA 4383641..4384195 (+) 555 WP_033146750.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  PE051_RS21240 (PE051_21200) lptB 4384202..4384927 (+) 726 WP_033146751.1 LPS export ABC transporter ATP-binding protein -
  PE051_RS21245 (PE051_21205) rpoN/rpoN1 4384975..4386408 (+) 1434 WP_198886068.1 RNA polymerase factor sigma-54 Machinery gene
  PE051_RS21250 (PE051_21210) hpf 4386431..4386718 (+) 288 WP_008501444.1 ribosome hibernation promoting factor -
  PE051_RS21255 (PE051_21215) ptsN 4386801..4387292 (+) 492 WP_008501443.1 PTS IIA-like nitrogen regulatory protein PtsN -
  PE051_RS21260 (PE051_21220) rapZ 4387338..4388192 (+) 855 WP_014885397.1 RNase adapter RapZ -
  PE051_RS21265 (PE051_21225) npr 4388189..4388461 (+) 273 WP_003861872.1 PTS phosphocarrier protein NPr -
  PE051_RS21270 (PE051_21230) mtgA 4388501..4389226 (-) 726 WP_334753552.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  PE051_RS21275 (PE051_21235) elbB 4389223..4389876 (-) 654 WP_039260518.1 isoprenoid biosynthesis glyoxalase ElbB -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54183.92 Da        Isoelectric Point: 4.3173

>NTDB_id=774762 PE051_RS21245 WP_198886068.1 4384975..4386408(+) (rpoN/rpoN1) [Enterobacter asburiae strain WUM-UW/843]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDLHDEVDTQQSQDTEALDTADALEQKEMPD
ELPLDASWDEIYTAGTPSGTRADYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVTLDD
ILESMGDEEIELEEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFSKETPWLDEARLIISDHLDLLANHDFRSLMRVTR
LKEEVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNDRWVVELNSDSIPRLQINQQYASMCTSARNDSDNQYIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=774762 PE051_RS21245 WP_198886068.1 4384975..4386408(+) (rpoN/rpoN1) [Enterobacter asburiae strain WUM-UW/843]
ATGAAGCAAGGTTTGCAATTAAGGCTCAGCCAACAACTGGCAATGACGCCGCAGCTACAGCAGGCAATTCGCCTGTTGCA
ACTGTCCACGTTAGAACTTCAGCAGGAGCTCCAGCAGGCGCTGGACAGCAACCCCCTGCTGGAACAAACCGATCTTCATG
ACGAGGTAGATACTCAGCAGTCACAGGATACAGAAGCGCTCGACACTGCGGATGCACTCGAACAAAAAGAGATGCCCGAC
GAGCTACCGCTGGATGCCAGCTGGGATGAAATCTACACCGCCGGAACCCCTTCCGGTACGCGTGCAGACTACCAGGATGA
TGAGCTACCGGTCTATCAGGGAGAGACCACCCAGTCGCTGCAGGATTACCTGATGTGGCAGGTGGAACTTACCCCCTTCT
CCGATACCGACCGCGCGATTGCCACCTCAATTGTCGATGCCGTTGACGACACCGGCTATTTGACCGTCACGCTGGACGAT
ATCCTGGAAAGCATGGGCGACGAAGAGATTGAACTTGAGGAAGTCGAAGCCGTACTGAAGCGCATCCAGCGTTTCGATCC
GGTAGGCGTGGCCGCAAAAGATCTGCGCGACTGCCTGCTGATCCAGCTTTCTCAGTTCAGCAAAGAGACGCCATGGCTCG
ACGAGGCGCGTTTAATCATCAGCGATCACCTGGATCTGCTGGCCAACCACGATTTCCGCAGCCTGATGCGCGTCACGCGC
CTGAAGGAAGAGGTGCTGAAAGAAGCGGTAAATCTGATCCAGTCGCTCGATCCGCGCCCGGGACAGTCGATCCAGACCAG
CGAGCCCGAGTACGTCATCCCGGACGTGCTGGTGAGAAAACACAATGACCGCTGGGTCGTTGAACTGAATTCAGACAGCA
TCCCTCGCCTGCAAATCAACCAGCAGTATGCCTCCATGTGCACCAGCGCGCGTAACGACTCCGACAATCAATATATTCGT
AGCAATCTTCAGGAAGCGCGATGGTTGATCAAAAGTCTGGAGAGCCGAAATGATACGCTGCTGCGCGTCAGCCGCTGTAT
TGTCGAACAGCAGCAGGCGTTCTTTGAGCAGGGCGAAGAGTATATGAAACCGATGGTACTGGCGGATATCGCCCAGGCCG
TCGAAATGCATGAATCAACCATTTCCCGTGTCACCACGCAGAAGTATCTGCACAGTCCACGCGGTATATTTGAGCTTAAG
TATTTCTTCTCCAGCCATGTGAATACCGAGGGCGGCGGCGAAGCGTCGTCAACGGCCATTCGTGCCCTGGTGAAGAAGTT
GATCGCCGCGGAGAACCCCGCGAAGCCACTAAGCGACAGTAAGTTAACCACCATGCTGTCCGATCAGGGTATTATGGTGG
CACGTCGTACTGTTGCGAAGTATCGAGAGTCTTTATCCATTCCGCCGTCCAACCAGCGTAAACAGCTGGTTTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.545

100

0.482