Detailed information NTG0774760

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QUS04_RS06095
• Genome accession: NZ_CP128592
• Coordinates: 1046446..1047438 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain VG12A2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1041446..1052438

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QUS04_RS06065 (QUS04_06065)	ispD	1041507..1042217 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QUS04_RS06070 (QUS04_06070)	ispF	1042217..1042696 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QUS04_RS06075 (QUS04_06075)	truD	1042693..1043742 (+)	1050	WP_000568921.1	tRNA pseudouridine(13) synthase TruD	-
QUS04_RS06080 (QUS04_06080)	surE	1043723..1044484 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QUS04_RS06085 (QUS04_06085)	pcm	1044478..1045104 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QUS04_RS06090 (QUS04_06090)	nlpD	1045289..1046383 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
QUS04_RS06095 (QUS04_06095)	rpoS	1046446..1047438 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QUS04_RS06100 (QUS04_06100)	-	1047559..1047966 (-)	408	WP_001208072.1	MarR family transcriptional regulator	-
QUS04_RS06105 (QUS04_06105)	-	1048113..1048706 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
QUS04_RS06110 (QUS04_06110)	-	1048706..1050133 (+)	1428	WP_000863237.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
QUS04_RS06115 (QUS04_06115)	-	1050144..1050380 (+)	237	WP_000562992.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
QUS04_RS06120 (QUS04_06120)	ygbN	1050419..1051783 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=774760 QUS04_RS06095 WP_000081550.1 1046446..1047438(+) (rpoS) [Escherichia coli strain VG12A2]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=774760 QUS04_RS06095 WP_000081550.1 1046446..1047438(+) (rpoS) [Escherichia coli strain VG12A2]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715