Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   PE794_RS07410 Genome accession   NZ_CP115971
Coordinates   1588779..1589072 (-) Length   97 a.a.
NCBI ID   WP_005598477.1    Uniprot ID   A3N205
Organism   Actinobacillus pleuropneumoniae strain HBS1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1583779..1594072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PE794_RS07380 (PE794_07380) artM 1584120..1584803 (-) 684 WP_005598468.1 arginine ABC transporter permease ArtM -
  PE794_RS07385 (PE794_07385) artQ 1584803..1585474 (-) 672 WP_005598470.1 arginine ABC transporter permease ArtQ -
  PE794_RS07390 (PE794_07390) - 1585480..1586199 (-) 720 WP_043991873.1 transporter substrate-binding domain-containing protein -
  PE794_RS07395 (PE794_07395) artP 1586219..1586953 (-) 735 WP_005598473.1 arginine ABC transporter ATP-binding protein ArtP -
  PE794_RS07400 (PE794_07400) - 1587178..1587675 (-) 498 WP_005598474.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  PE794_RS07405 (PE794_07405) - 1587748..1588701 (+) 954 WP_043991874.1 calcium/sodium antiporter -
  PE794_RS07410 (PE794_07410) HI0659 1588779..1589072 (-) 294 WP_005598477.1 helix-turn-helix domain-containing protein Machinery gene
  PE794_RS07415 (PE794_07415) - 1589053..1589424 (-) 372 WP_005619674.1 type II toxin-antitoxin system RelE/ParE family toxin -
  PE794_RS07420 (PE794_07420) - 1589618..1591369 (+) 1752 WP_005598482.1 protein-disulfide reductase DsbD -
  PE794_RS07425 (PE794_07425) - 1591427..1591996 (+) 570 WP_005598484.1 elongation factor P hydroxylase -
  PE794_RS07430 (PE794_07430) rsmI 1592040..1592894 (-) 855 WP_005598486.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10935.81 Da        Isoelectric Point: 10.3120

>NTDB_id=774736 PE794_RS07410 WP_005598477.1 1588779..1589072(-) (HI0659) [Actinobacillus pleuropneumoniae strain HBS1]
MSPIGSSWTSFEQEIFDESEIAETQFRIRLILEIIETRQQLGISQRKLEKLSGVKQSMIARVEKGSVNPSLATVLKLLVP
LGKTLQIVPLDKNKTVR

Nucleotide


Download         Length: 294 bp        

>NTDB_id=774736 PE794_RS07410 WP_005598477.1 1588779..1589072(-) (HI0659) [Actinobacillus pleuropneumoniae strain HBS1]
ATGAGCCCTATTGGTTCTAGTTGGACATCGTTTGAACAAGAAATTTTTGACGAGTCGGAAATAGCGGAAACTCAGTTTCG
CATACGGCTTATTTTAGAAATCATTGAAACCCGTCAGCAGCTCGGTATCTCTCAACGAAAATTGGAGAAATTAAGCGGCG
TAAAACAATCTATGATTGCTCGGGTAGAAAAAGGCTCGGTTAATCCGTCGTTGGCGACGGTATTAAAGTTGCTTGTGCCG
TTGGGGAAAACTTTACAAATCGTACCGTTAGATAAAAACAAAACGGTACGTTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(35-86)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3N205

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

66.667

92.784

0.619