Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PE074_RS09790 Genome accession   NZ_CP115969
Coordinates   2072957..2074336 (+) Length   459 a.a.
NCBI ID   WP_063455177.1    Uniprot ID   -
Organism   Wohlfahrtiimonas chitiniclastica strain BM-Y     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2067957..2079336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PE074_RS09770 (PE074_09770) hflC 2068506..2069390 (-) 885 WP_008316523.1 protease modulator HflC -
  PE074_RS09775 (PE074_09775) hflK 2069409..2070686 (-) 1278 WP_063455175.1 FtsH protease activity modulator HflK -
  PE074_RS09780 (PE074_09780) hflX 2070766..2072055 (-) 1290 WP_063455176.1 ribosome rescue GTPase HflX -
  PE074_RS09785 (PE074_09785) hfq 2072111..2072377 (-) 267 WP_008316518.1 RNA chaperone Hfq -
  PE074_RS09790 (PE074_09790) radA 2072957..2074336 (+) 1380 WP_063455177.1 DNA repair protein RadA Machinery gene
  PE074_RS09795 (PE074_09795) mnmE 2074365..2075690 (-) 1326 WP_063455178.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE -
  PE074_RS09800 (PE074_09800) yidC 2075778..2077472 (-) 1695 WP_063455179.1 membrane protein insertase YidC -
  PE074_RS09805 (PE074_09805) yidD 2077510..2077719 (-) 210 WP_008316510.1 membrane protein insertion efficiency factor YidD -
  PE074_RS09810 (PE074_09810) rnpA 2077716..2078063 (-) 348 WP_008316508.1 ribonuclease P protein component -
  PE074_RS09815 (PE074_09815) rpmH 2078126..2078260 (-) 135 WP_081600433.1 50S ribosomal protein L34 -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49828.23 Da        Isoelectric Point: 7.0607

>NTDB_id=774720 PE074_RS09790 WP_063455177.1 2072957..2074336(+) (radA) [Wohlfahrtiimonas chitiniclastica strain BM-Y]
MSKTKKQYVCHACGNVTQKWAGQCLECLEWNTIEEAIVEKAPPTSARLSGYAGTAGSAAIQTLNNIQKEEHQRYDTGLTE
LNRVLGGGLVTGSVVLIGGDPGIGKSTILLQTMVHFSQHYDVLYVTGEESPSQIALRAERLSLAQSELKILSETSVEKII
ATAEALTPKIMVIDSIQTIFTEFLTSAPGNVAQVRESAALLTRYAKRTNTAIFLVGHVTKEGAIAGPRVLEHMVDSVLYF
EGEVGSRFRVMRAYKNRFGPVNELGIFAMTDKGLREVSNPSAIFLSRHDEPSAGSVIMVTKEGTRPLLVEIQALVDQSFG
NYPRRVTLGIEQARLTMLLAVLHRHAGIAMNDQDVYVNAVGGVKVTETASDLAVIAATYSSFRNKVIPADLVIFGEVGLS
GEIRPIPHGEERLKEAFKHGFTKAILPKGNAPRKIPEGLKVVSVTKLSEVIDALNDFSE

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=774720 PE074_RS09790 WP_063455177.1 2072957..2074336(+) (radA) [Wohlfahrtiimonas chitiniclastica strain BM-Y]
ATGAGCAAAACGAAAAAACAGTACGTTTGTCATGCTTGTGGCAACGTCACCCAAAAATGGGCCGGTCAGTGTCTTGAGTG
CCTAGAATGGAACACCATTGAAGAAGCGATTGTGGAAAAAGCGCCGCCCACTTCCGCGCGTTTATCAGGTTATGCGGGCA
CCGCAGGCAGTGCTGCGATTCAAACCCTCAACAATATTCAAAAAGAGGAACATCAGCGCTATGATACAGGATTAACCGAG
CTAAATCGAGTCCTTGGCGGTGGGTTGGTCACAGGCTCTGTGGTGCTCATTGGCGGTGATCCCGGCATTGGTAAATCCAC
CATTTTATTGCAAACAATGGTACATTTCAGTCAGCATTATGATGTGCTCTATGTGACGGGTGAAGAGTCCCCAAGCCAAA
TTGCCTTGCGGGCAGAGCGCTTATCCTTGGCGCAAAGTGAGCTTAAGATTCTTTCTGAAACGTCCGTAGAAAAGATCATT
GCAACGGCAGAAGCCCTCACGCCTAAAATCATGGTCATTGACTCCATTCAAACCATTTTTACAGAGTTCTTAACCTCTGC
GCCCGGCAATGTGGCACAAGTCAGAGAGAGTGCTGCCCTGCTCACTCGTTATGCCAAACGCACCAACACTGCCATCTTCT
TAGTGGGTCATGTCACCAAAGAAGGCGCAATCGCAGGGCCGCGCGTATTAGAACACATGGTGGACTCTGTTTTATACTTT
GAAGGTGAAGTCGGTTCGCGTTTTCGCGTCATGCGTGCCTATAAAAACCGCTTTGGTCCTGTCAATGAGCTTGGCATCTT
CGCCATGACAGATAAAGGCTTACGTGAAGTGAGTAATCCTTCTGCCATCTTTTTATCGCGCCACGATGAACCGAGTGCCG
GCAGTGTCATCATGGTGACCAAAGAAGGCACGCGCCCGCTTTTGGTTGAAATTCAAGCTTTAGTGGATCAATCTTTTGGC
AACTATCCGCGCCGCGTGACTTTAGGCATCGAACAAGCCCGCTTAACCATGCTGCTTGCGGTATTGCACCGCCATGCAGG
CATCGCCATGAATGATCAAGATGTGTATGTCAATGCTGTGGGCGGCGTCAAAGTGACAGAAACCGCTTCAGATTTAGCCG
TCATTGCTGCAACTTATTCAAGTTTTCGCAATAAAGTGATTCCGGCGGATTTAGTGATCTTTGGTGAAGTGGGTTTATCC
GGTGAAATTCGCCCGATTCCGCATGGTGAAGAGCGTTTAAAAGAAGCCTTTAAACATGGATTCACCAAAGCCATTTTACC
AAAAGGCAATGCCCCAAGGAAAATTCCGGAAGGCTTAAAAGTGGTCTCTGTGACAAAATTATCTGAAGTGATTGATGCAC
TCAATGATTTTAGCGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-222)

Subunit ChlI of Mg-chelatase (ChlI)

(345-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.024

100

0.492
  radA Streptococcus mitis SK321

46.93

99.346

0.466
  radA Streptococcus mitis NCTC 12261

46.711

99.346

0.464
  radA Streptococcus pneumoniae TIGR4

46.799

98.693

0.462
  radA Streptococcus pneumoniae R6

46.799

98.693

0.462
  radA Streptococcus pneumoniae Rx1

46.799

98.693

0.462
  radA Streptococcus pneumoniae D39

46.799

98.693

0.462