Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   PE074_RS04360 Genome accession   NZ_CP115969
Coordinates   885424..886380 (-) Length   318 a.a.
NCBI ID   WP_018122565.1    Uniprot ID   A0A256C5N7
Organism   Wohlfahrtiimonas chitiniclastica strain BM-Y     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 880424..891380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PE074_RS04335 (PE074_04335) - 881169..881771 (+) 603 WP_008315809.1 hypothetical protein -
  PE074_RS04340 (PE074_04340) - 881818..882657 (+) 840 WP_246781912.1 formate/nitrite transporter family protein -
  PE074_RS04345 (PE074_04345) - 882699..883703 (-) 1005 WP_063455592.1 siderophore ABC transporter substrate-binding protein -
  PE074_RS04350 (PE074_04350) - 883728..884486 (-) 759 WP_008315805.1 ATP-binding cassette domain-containing protein -
  PE074_RS04355 (PE074_04355) - 884480..885427 (-) 948 WP_008315804.1 iron chelate uptake ABC transporter family permease subunit -
  PE074_RS04360 (PE074_04360) ceuB 885424..886380 (-) 957 WP_018122565.1 ABC transporter permease Machinery gene
  PE074_RS04365 (PE074_04365) - 886626..887480 (+) 855 WP_008315802.1 EamA family transporter -
  PE074_RS04370 (PE074_04370) - 887681..888028 (+) 348 WP_063455593.1 SMR family transporter -
  PE074_RS04375 (PE074_04375) - 888021..888356 (+) 336 WP_063455594.1 SMR family transporter -
  PE074_RS04380 (PE074_04380) - 888436..888756 (+) 321 WP_063455595.1 Dabb family protein -
  PE074_RS04385 (PE074_04385) - 888813..890384 (-) 1572 WP_063455596.1 AbgT family transporter -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 34661.00 Da        Isoelectric Point: 9.9503

>NTDB_id=774710 PE074_RS04360 WP_018122565.1 885424..886380(-) (ceuB) [Wohlfahrtiimonas chitiniclastica strain BM-Y]
MRKRHLFLILIILSVISLFVGVLNISVRDVLTLNLTEIQLQTIFVSRVPRLVTILIAGASLSIAGLIMQKLSQNAFVSPT
TAGTLESAKLGILVALLLFASSSPIVKMLLAFAFSLAGTFIFMKILNHIRYKDAVFVPLVGLMFGGIISSISTFIAYKYD
LIQNISSWLLGDFSMVMSGRYELMYVSIPLMIVAYLYANQFAIAGLGEDFAKNLGLKYHQVVNIGLAIVAMITACVILTV
GMIPFIGLIVPNIVSLYKGDNVRITLPYTALVGAIIVLVCDIVGRIIIHPYEIPISVTIGILGSTLFVWLLFKKAANT

Nucleotide


Download         Length: 957 bp        

>NTDB_id=774710 PE074_RS04360 WP_018122565.1 885424..886380(-) (ceuB) [Wohlfahrtiimonas chitiniclastica strain BM-Y]
ATGAGAAAACGTCATCTTTTTCTCATTTTAATCATCCTCTCTGTGATCTCACTATTTGTGGGTGTCTTGAACATCTCTGT
GCGTGATGTTCTCACACTTAACCTCACAGAGATTCAATTGCAGACCATTTTTGTGAGCCGCGTGCCGCGCTTGGTGACCA
TTTTAATTGCGGGGGCAAGCTTAAGCATTGCAGGTTTGATCATGCAAAAGCTGAGTCAAAATGCCTTTGTTTCTCCAACC
ACCGCAGGCACGTTAGAATCCGCAAAATTAGGGATTTTAGTGGCACTTCTGCTCTTTGCCAGCTCAAGCCCGATTGTCAA
AATGCTCCTTGCTTTTGCCTTTTCCTTAGCGGGCACCTTTATTTTCATGAAAATTTTAAACCACATCCGCTATAAGGATG
CGGTGTTTGTCCCATTAGTGGGCTTAATGTTTGGCGGGATCATCAGCTCGATCTCAACTTTCATCGCCTATAAATATGAC
CTCATTCAAAACATCTCCTCATGGCTGCTTGGCGATTTTTCCATGGTGATGAGTGGGCGCTATGAACTCATGTATGTTTC
CATTCCCTTAATGATTGTGGCGTATCTTTATGCCAATCAATTTGCCATTGCAGGTTTAGGGGAAGATTTTGCCAAAAATT
TAGGGCTCAAATACCATCAAGTGGTGAACATTGGATTGGCGATTGTGGCGATGATCACTGCCTGCGTGATTCTCACCGTG
GGCATGATTCCCTTCATTGGGCTCATTGTGCCAAACATTGTGTCGCTCTATAAAGGTGACAATGTGCGCATCACACTGCC
TTACACCGCGCTTGTGGGCGCCATCATTGTGCTTGTGTGTGACATTGTCGGGCGCATCATCATTCATCCATACGAGATTC
CCATCAGCGTCACCATTGGTATTTTGGGCAGCACCCTATTTGTCTGGTTACTCTTTAAAAAGGCTGCAAACACATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A256C5N7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.221

96.855

0.525