Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PCP06_RS06855 Genome accession   NZ_CP115964
Coordinates   1424512..1425069 (+) Length   185 a.a.
NCBI ID   WP_023132294.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain LYSZa2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1419512..1430069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP06_RS06835 (PCP06_06830) pilR 1420788..1422125 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  PCP06_RS06840 (PCP06_06835) thiO 1422171..1423265 (-) 1095 WP_003119424.1 glycine oxidase ThiO -
  PCP06_RS06845 (PCP06_06840) - 1423400..1423909 (+) 510 WP_003102595.1 Tfp pilus assembly protein FimT/FimU -
  PCP06_RS06850 (PCP06_06845) - 1424015..1424521 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  PCP06_RS06855 (PCP06_06850) pilV 1424512..1425069 (+) 558 WP_023132294.1 type 4a pilus minor pilin PilV Machinery gene
  PCP06_RS06860 (PCP06_06855) pilW 1425066..1425890 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  PCP06_RS06865 (PCP06_06860) pilX 1425887..1426474 (+) 588 WP_023090846.1 type 4a pilus minor pilin PilX -
  PCP06_RS06870 (PCP06_06865) pilY1 1426486..1429977 (+) 3492 WP_023132295.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20045.15 Da        Isoelectric Point: 8.2255

>NTDB_id=774650 PCP06_RS06855 WP_023132294.1 1424512..1425069(+) (pilV) [Pseudomonas aeruginosa strain LYSZa2]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGAAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=774650 PCP06_RS06855 WP_023132294.1 1424512..1425069(+) (pilV) [Pseudomonas aeruginosa strain LYSZa2]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGGCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

98.919

100

0.989