Detailed information NTG0774630

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QUS02_RS18230
• Genome accession: NZ_CP128584
• Coordinates: 3532296..3533288 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain VG48B2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3527296..3538288

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QUS02_RS18210 (QUS02_18210)	otnK	3528071..3529333 (+)	1263	WP_000590403.1	3-oxo-tetronate kinase	-
QUS02_RS18215 (QUS02_18215)	ygbL	3529330..3529968 (+)	639	WP_001278994.1	aldolase	-
QUS02_RS18220 (QUS02_18220)	ygbM	3529973..3530749 (+)	777	WP_001136925.1	HPr family phosphocarrier protein	-
QUS02_RS18225 (QUS02_18225)	ygbN	3530838..3532202 (+)	1365	WP_000104459.1	GntP family transporter	-
QUS02_RS18230 (QUS02_18230)	rpoS	3532296..3533288 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QUS02_RS18235 (QUS02_18235)	nlpD	3533351..3534445 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
QUS02_RS18240 (QUS02_18240)	pcm	3534630..3535256 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QUS02_RS18245 (QUS02_18245)	surE	3535250..3536011 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QUS02_RS18250 (QUS02_18250)	truD	3535992..3537041 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
QUS02_RS18255 (QUS02_18255)	ispF	3537038..3537517 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QUS02_RS18260 (QUS02_18260)	ispD	3537517..3538227 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=774630 QUS02_RS18230 WP_000081550.1 3532296..3533288(-) (rpoS) [Escherichia coli strain VG48B2]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=774630 QUS02_RS18230 WP_000081550.1 3532296..3533288(-) (rpoS) [Escherichia coli strain VG48B2]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715