Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QUS02_RS08655 Genome accession   NZ_CP128584
Coordinates   1614448..1615077 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain VG48B2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1609448..1620077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUS02_RS08635 (QUS02_08635) ycbZ 1609849..1611609 (-) 1761 WP_000156518.1 Lon protease family protein -
  QUS02_RS08640 (QUS02_08640) matP 1611795..1612247 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QUS02_RS08645 (QUS02_08645) ompA 1612323..1613363 (-) 1041 WP_000750416.1 porin OmpA -
  QUS02_RS08650 (QUS02_08650) sulA 1613720..1614229 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QUS02_RS08655 (QUS02_08655) sxy/tfoX 1614448..1615077 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QUS02_RS08660 (QUS02_08660) yccS 1615040..1617202 (-) 2163 WP_000875061.1 YccS family putative transporter -
  QUS02_RS08665 (QUS02_08665) yccF 1617212..1617658 (-) 447 WP_001261235.1 YccF domain-containing protein -
  QUS02_RS08670 (QUS02_08670) helD 1617781..1619835 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=774606 QUS02_RS08655 WP_000839153.1 1614448..1615077(+) (sxy/tfoX) [Escherichia coli strain VG48B2]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=774606 QUS02_RS08655 WP_000839153.1 1614448..1615077(+) (sxy/tfoX) [Escherichia coli strain VG48B2]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1