Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   PG903_RS01825 Genome accession   NZ_CP115952
Coordinates   387172..388671 (-) Length   499 a.a.
NCBI ID   WP_013207040.1    Uniprot ID   -
Organism   Ralstonia solanacearum CFBP2957     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 382172..393671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG903_RS01795 - 382661..383314 (-) 654 WP_003269875.1 LON peptidase substrate-binding domain-containing protein -
  PG903_RS01800 rapZ 383392..384285 (-) 894 WP_013207042.1 RNase adapter RapZ -
  PG903_RS01805 - 384379..384726 (-) 348 WP_013207041.1 PsiF family protein -
  PG903_RS01810 hprK 384917..385891 (-) 975 WP_003262273.1 HPr(Ser) kinase/phosphatase -
  PG903_RS01815 ptsN 385962..386417 (-) 456 WP_003269869.1 PTS IIA-like nitrogen regulatory protein PtsN -
  PG903_RS01820 hpf 386767..387120 (-) 354 WP_003269867.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  PG903_RS01825 rpoN/rpoN1 387172..388671 (-) 1500 WP_013207040.1 RNA polymerase factor sigma-54 Machinery gene
  PG903_RS01830 lptB 388769..389557 (-) 789 WP_013207039.1 LPS export ABC transporter ATP-binding protein -
  PG903_RS01835 lptA 389591..390187 (-) 597 WP_013207038.1 lipopolysaccharide transport periplasmic protein LptA -
  PG903_RS01840 lptC 390255..390887 (-) 633 WP_013207037.1 LPS export ABC transporter periplasmic protein LptC -
  PG903_RS01845 - 390889..391476 (-) 588 WP_013207036.1 KdsC family phosphatase -
  PG903_RS01850 - 391509..392492 (-) 984 WP_003269858.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 55202.61 Da        Isoelectric Point: 4.8496

>NTDB_id=774572 PG903_RS01825 WP_013207040.1 387172..388671(-) (rpoN/rpoN1) [Ralstonia solanacearum CFBP2957]
MKQSLQLRLSQHLALTPQLQQSIRLLQLSTIELQQEVEQALTENPLLERENEWLDTSARIGADGSVSALQSNSATPLPTE
SPPPAANGSDHADTAEAPYENGSDFDSDYGSDRSDWSLDDFARKPQSDEDDRAPMQLREAEPTMREFLMEQLAPLKLSTR
DKGLVIFLIESLDDEGYLTGSLDEILTDLPAELEIELDELQAALRMLQSFDPAGIGARSAAECLTLQLQRLDSPAKPLAL
AIVNQHLELLAARDYTRLKKALSVDEGALKAAHELIRSLAPFPGHAFGRAEADFVVPDVVVRKTAAGWMAQLNPDVMPRL
RINDMYAQILRSSRGESGAANLQQKLQEARWLIKNIQQRFDTILRVSQAIVERQKSFFTHGEIAMRPLVLREIADTLGLH
ESTISRVTTNKYMATPMGTFELKYFFGSHVSTETGGAASSTAIRALIKQLVGAEDPKNPLSDSRIAELLGEQGFVVARRT
VAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=774572 PG903_RS01825 WP_013207040.1 387172..388671(-) (rpoN/rpoN1) [Ralstonia solanacearum CFBP2957]
ATGAAACAGTCGCTCCAGCTCCGTCTCTCTCAGCATCTGGCGCTCACGCCGCAACTGCAGCAGTCGATCCGGCTGCTGCA
ACTGTCGACCATCGAACTGCAACAGGAAGTCGAGCAGGCGCTGACCGAGAACCCGCTGCTGGAGCGCGAGAACGAGTGGC
TCGACACCTCCGCGCGCATCGGCGCCGATGGCTCGGTCAGCGCACTGCAGAGCAACAGCGCCACCCCGCTGCCGACCGAG
TCGCCGCCGCCCGCCGCCAACGGCTCGGACCACGCCGACACGGCCGAGGCACCGTACGAAAACGGCAGCGACTTCGACAG
CGACTACGGCTCCGATCGCTCCGACTGGAGCCTCGACGACTTCGCACGCAAACCCCAGTCCGACGAAGACGATCGCGCTC
CGATGCAGTTGCGCGAGGCCGAGCCCACGATGCGCGAATTCCTGATGGAACAGCTGGCGCCGCTCAAGCTGTCCACGCGC
GACAAGGGCCTCGTCATCTTCCTGATCGAGTCGCTGGACGACGAGGGCTACCTGACCGGCTCGCTCGACGAGATCCTCAC
CGACCTGCCGGCCGAACTCGAGATCGAACTCGACGAACTGCAGGCCGCGCTGCGCATGCTGCAGAGCTTCGACCCGGCCG
GCATCGGCGCGCGCTCGGCGGCGGAATGCCTGACGCTGCAGCTGCAGCGCCTGGACTCGCCGGCCAAGCCGCTCGCGCTG
GCCATCGTCAACCAGCATCTCGAATTGCTCGCCGCGCGCGACTACACGCGCCTGAAGAAAGCGCTGTCCGTCGACGAAGG
CGCGCTGAAGGCCGCGCATGAACTGATCCGCTCGCTGGCACCGTTCCCGGGCCACGCCTTCGGGCGCGCCGAGGCCGACT
TCGTCGTGCCCGATGTCGTGGTGCGTAAAACCGCCGCAGGCTGGATGGCGCAACTGAACCCGGACGTGATGCCGCGCCTG
CGCATCAACGACATGTACGCCCAGATCCTGCGCAGCAGCCGCGGCGAGTCGGGCGCCGCCAACCTGCAGCAGAAGCTGCA
AGAAGCGCGCTGGCTGATCAAGAACATCCAGCAGCGCTTCGACACCATCCTGCGTGTCTCGCAAGCGATTGTCGAACGTC
AAAAGAGCTTTTTCACGCACGGTGAAATCGCCATGCGCCCCTTGGTTTTGCGGGAAATAGCCGATACACTGGGTCTACAC
GAGTCCACGATCTCCCGTGTGACGACCAACAAGTACATGGCGACCCCCATGGGGACCTTCGAGCTGAAGTACTTCTTCGG
CAGCCATGTATCGACGGAAACCGGCGGGGCCGCGTCATCCACCGCGATACGCGCGCTCATCAAGCAACTTGTAGGAGCCG
AAGACCCGAAGAATCCTCTGTCCGATAGCAGAATTGCCGAGCTGTTAGGCGAACAAGGATTCGTGGTGGCCCGTCGGACG
GTGGCCAAGTACCGCGAAGCCCTCAAAATCCCAGCAGTGAATTTGCGCAAGTCTTTATAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(341-497)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(136-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

97.395

100

0.974