Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QUS00_RS18415 Genome accession   NZ_CP128581
Coordinates   3480605..3481210 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain VG888-46E9     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3475605..3486210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUS00_RS18400 (QUS00_18400) - 3476455..3477668 (+) 1214 WP_139371347.1 IS3 family transposase -
  QUS00_RS18405 (QUS00_18405) adk 3477796..3478440 (-) 645 WP_001220233.1 adenylate kinase -
  QUS00_RS18410 (QUS00_18410) htpG 3478621..3480495 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  QUS00_RS18415 (QUS00_18415) recR 3480605..3481210 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QUS00_RS18420 (QUS00_18420) ybaB 3481210..3481539 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QUS00_RS18425 (QUS00_18425) dnaX 3481592..3483523 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  QUS00_RS18430 (QUS00_18430) apt 3483652..3484203 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QUS00_RS18435 (QUS00_18435) ybaN 3484356..3484733 (-) 378 WP_001188905.1 DUF454 family protein -
  QUS00_RS18440 (QUS00_18440) priC 3484803..3485330 (+) 528 WP_000844876.1 primosomal replication protein N'' -
  QUS00_RS18445 (QUS00_18445) rsmS 3485344..3485505 (+) 162 WP_001543543.1 pleiotropic regulatory protein RsmS -
  QUS00_RS18450 (QUS00_18450) - 3485558..3485656 (-) 99 Protein_3397 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=774555 QUS00_RS18415 WP_001195025.1 3480605..3481210(-) (recR) [Escherichia coli strain VG888-46E9]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=774555 QUS00_RS18415 WP_001195025.1 3480605..3481210(-) (recR) [Escherichia coli strain VG888-46E9]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443