Detailed information NTG0774524

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QUS00_RS06180
• Genome accession: NZ_CP128581
• Coordinates: 1025794..1026786 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain VG888-46E9
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1020794..1031786

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QUS00_RS06150 (QUS00_06150)	ispD	1020855..1021565 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QUS00_RS06155 (QUS00_06155)	ispF	1021565..1022044 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QUS00_RS06160 (QUS00_06160)	truD	1022041..1023090 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
QUS00_RS06165 (QUS00_06165)	surE	1023071..1023832 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QUS00_RS06170 (QUS00_06170)	pcm	1023826..1024452 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QUS00_RS06175 (QUS00_06175)	nlpD	1024637..1025731 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QUS00_RS06180 (QUS00_06180)	rpoS	1025794..1026786 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QUS00_RS06185 (QUS00_06185)	ygbN	1026880..1028244 (-)	1365	WP_000104441.1	GntP family transporter	-
QUS00_RS06190 (QUS00_06190)	ygbM	1028333..1029109 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
QUS00_RS06195 (QUS00_06195)	ygbL	1029114..1029752 (-)	639	WP_001278994.1	aldolase	-
QUS00_RS06200 (QUS00_06200)	otnK	1029749..1031011 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=774524 QUS00_RS06180 WP_000081550.1 1025794..1026786(+) (rpoS) [Escherichia coli strain VG888-46E9]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=774524 QUS00_RS06180 WP_000081550.1 1025794..1026786(+) (rpoS) [Escherichia coli strain VG888-46E9]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715