Detailed information    

insolico Bioinformatically predicted

Overview


Name   luxP   Type   Regulator
Locus tag   PG915_RS23360 Genome accession   NZ_CP115921
Coordinates   1690983..1692086 (-) Length   367 a.a.
NCBI ID   WP_353499350.1    Uniprot ID   A0AAU8BNG4
Organism   Vibrio chaetopteri strain CB1-14     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context


Location: 1685983..1697086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG915_RS23345 (PG915_23305) - 1686682..1686843 (+) 162 WP_353499347.1 hypothetical protein -
  PG915_RS23350 (PG915_23310) - 1687035..1688294 (+) 1260 WP_353499348.1 hydroxymethylglutaryl-CoA reductase -
  PG915_RS23355 (PG915_23315) luxQ 1688392..1690965 (-) 2574 WP_353499349.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  PG915_RS23360 (PG915_23320) luxP 1690983..1692086 (-) 1104 WP_353499350.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  PG915_RS23365 (PG915_23325) - 1692156..1692449 (-) 294 WP_353500205.1 GIY-YIG nuclease family protein -
  PG915_RS23370 (PG915_23330) - 1692514..1693182 (-) 669 WP_353499351.1 YceH family protein -
  PG915_RS23375 (PG915_23335) - 1693226..1693435 (-) 210 WP_353499352.1 hypothetical protein -
  PG915_RS23380 (PG915_23340) - 1693625..1693942 (+) 318 WP_006072802.1 DUF496 family protein -
  PG915_RS23385 (PG915_23345) - 1694234..1694482 (+) 249 WP_353499353.1 YgjV family protein -
  PG915_RS23390 (PG915_23350) - 1694812..1695165 (+) 354 WP_353499354.1 DUF1428 domain-containing protein -
  PG915_RS23395 (PG915_23355) - 1695179..1695754 (-) 576 WP_353499355.1 SOS response-associated peptidase -
  PG915_RS23400 (PG915_23360) - 1695804..1695959 (-) 156 WP_353499356.1 hypothetical protein -

Sequence


Protein


Download         Length: 367 a.a.        Molecular weight: 41741.95 Da        Isoelectric Point: 5.0240

>NTDB_id=774468 PG915_RS23360 WP_353499350.1 1690983..1692086(-) (luxP) [Vibrio chaetopteri strain CB1-14]
MRKLHTFFTIILLAAPSFTISANTILSDYWNYQQFLKTYPKQKQLAEQLQQTVLESAVPLSVKQKEPVTISVVYPGQQVS
DYWVRNIEAFERRLEELGVAYELNQVFTRPNEDYRQQSASLMEAVKNNSGYLIFTLDTTRHRKFIEHVLHSTDIKLILQN
ITTPVKSWADNPPFMYVGFDHVKGSLLLADYFKQRFGGEQTNYSVLYFSEGYVSDARGGTFIEQMDAQKSFNLSTSYYTK
ANRESGREATLNAMQQHPDVDFIYACATDVALGATDALRELGKTDVIVNGWGGGSAELDAIQRGDLDVTVMRMNDDTGVA
MAEAIKWDLEQKPVPQVYSGSFELVTSEDNAQRIEELKSRAFRYSDR

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=774468 PG915_RS23360 WP_353499350.1 1690983..1692086(-) (luxP) [Vibrio chaetopteri strain CB1-14]
ATGCGCAAATTACATACGTTTTTCACCATAATATTGCTTGCAGCGCCTTCTTTCACAATCTCTGCAAATACTATCCTGTC
TGATTATTGGAATTATCAACAGTTCCTGAAAACGTACCCGAAACAAAAGCAGCTCGCTGAACAATTGCAACAAACTGTCC
TTGAAAGTGCAGTGCCCTTGTCGGTCAAGCAAAAAGAGCCAGTGACTATCTCTGTTGTTTATCCAGGGCAGCAGGTGTCT
GACTATTGGGTAAGGAACATAGAAGCATTTGAGCGTCGATTAGAAGAATTAGGTGTTGCCTATGAGCTAAATCAGGTTTT
CACTCGTCCTAACGAAGACTACCGACAGCAAAGTGCATCGCTGATGGAAGCGGTCAAAAATAATTCGGGCTATCTGATCT
TTACCTTAGATACAACAAGGCACCGCAAGTTCATTGAGCATGTTTTGCATTCAACCGATATAAAGCTAATCCTACAAAAT
ATCACTACGCCAGTAAAAAGCTGGGCTGATAACCCACCATTTATGTATGTTGGCTTTGATCACGTCAAAGGAAGCTTGTT
GCTCGCCGACTATTTCAAACAACGCTTCGGTGGTGAACAGACAAATTACTCAGTGTTGTATTTCTCTGAAGGGTATGTGA
GTGATGCTCGTGGCGGTACTTTCATTGAACAAATGGATGCTCAAAAAAGCTTTAACTTATCTACATCTTATTACACCAAA
GCGAATCGAGAGAGTGGTCGAGAAGCGACACTCAATGCGATGCAGCAGCATCCTGATGTAGACTTTATCTACGCTTGTGC
AACAGATGTCGCTTTGGGCGCAACAGATGCACTGCGTGAGCTCGGAAAAACCGATGTCATCGTCAATGGTTGGGGTGGCG
GCTCTGCTGAGTTGGATGCCATTCAGCGTGGGGACTTGGATGTCACTGTTATGCGAATGAATGATGATACTGGAGTGGCT
ATGGCAGAAGCAATCAAGTGGGATCTCGAACAAAAACCGGTACCACAAGTCTATTCGGGCAGTTTCGAGTTAGTCACCAG
TGAAGACAATGCTCAACGAATTGAAGAGCTTAAATCTCGAGCATTTCGTTATTCTGATCGATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.536

98.638

0.627