Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   PG915_RS16420 Genome accession   NZ_CP115921
Coordinates   69605..70786 (+) Length   393 a.a.
NCBI ID   WP_353499503.1    Uniprot ID   A0AAU8BPC9
Organism   Vibrio chaetopteri strain CB1-14     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 64605..75786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG915_RS16405 (PG915_16385) - 65363..66358 (-) 996 WP_353499500.1 CobW family GTP-binding protein -
  PG915_RS16410 (PG915_16390) clcA 66900..68303 (+) 1404 WP_353499501.1 H(+)/Cl(-) exchange transporter ClcA -
  PG915_RS16415 (PG915_16395) - 68494..69381 (+) 888 WP_418643004.1 TDT family transporter -
  PG915_RS16420 (PG915_16400) cqsA 69605..70786 (+) 1182 WP_353499503.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  PG915_RS16425 (PG915_16405) - 70853..72901 (-) 2049 WP_353499504.1 response regulator -
  PG915_RS16430 (PG915_16410) folE 73098..73751 (-) 654 WP_353499505.1 GTP cyclohydrolase I FolE -
  PG915_RS16435 (PG915_16415) moeA 73956..75191 (+) 1236 WP_353500212.1 molybdopterin molybdotransferase MoeA -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43790.66 Da        Isoelectric Point: 6.4082

>NTDB_id=774466 PG915_RS16420 WP_353499503.1 69605..70786(+) (cqsA) [Vibrio chaetopteri strain CB1-14]
MHLTKIKKTLPSFITQKHEHFIADRISSNSENHPVVCGGRPSATDVVMQTNDYLCLHDHSEIQQAHIQGIRETNESLLMS
GVYLLGAEKESDFESKLARHVGFESCLVTQSGWTANVNLLQAICQKDTNVYVDFFAHASLWEGARIAGANVHMFMHNNIK
HLKRQISRNGSGIILVDSIYSTVGTVAPLVDLVSLAYEYDCALVVDESHSLGTHEPRGAGLVAELGLTEHVDYITASLAK
TYAYRAGVILANEKTNYCVPMVAFPAIFSSTMLPYELARLSKTHDVIVSSEKRRMSLTENAEYLNKQLRTIGFDIQSNSQ
IIGLETGEVENTIKVRNFFEENGVFGSVFAPPATPNNKHILRLSINAKHTKQDLDRVIEVCRLAWNNDDLNFD

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=774466 PG915_RS16420 WP_353499503.1 69605..70786(+) (cqsA) [Vibrio chaetopteri strain CB1-14]
ATGCACTTAACAAAGATCAAAAAGACTCTCCCAAGTTTTATTACACAAAAGCATGAGCACTTTATTGCAGATAGGATAAG
TTCAAATTCTGAAAACCATCCTGTTGTTTGTGGTGGTCGCCCTTCTGCGACCGATGTTGTGATGCAAACTAACGACTACC
TTTGCCTGCACGATCACTCTGAAATTCAACAAGCTCATATTCAAGGGATCCGCGAAACGAACGAAAGCCTCCTGATGTCT
GGTGTTTACCTACTTGGTGCAGAAAAAGAAAGCGACTTTGAATCGAAGCTCGCTCGCCATGTTGGCTTCGAAAGCTGTTT
AGTGACTCAGTCCGGCTGGACGGCAAACGTGAATTTGCTGCAAGCGATTTGTCAAAAAGACACTAATGTTTACGTCGACT
TTTTTGCTCACGCTTCTTTGTGGGAGGGCGCCCGTATTGCAGGCGCAAACGTGCACATGTTTATGCACAACAACATCAAG
CACCTTAAACGTCAGATATCTAGAAATGGCAGCGGCATCATTCTTGTCGACTCGATATACAGCACTGTGGGTACTGTTGC
ACCACTCGTTGACTTAGTATCGCTCGCTTACGAATACGACTGTGCTTTGGTCGTTGATGAGTCTCACTCACTTGGTACTC
ATGAGCCAAGAGGAGCCGGACTTGTAGCAGAGCTAGGGCTTACAGAACATGTCGACTACATTACAGCTAGTCTTGCAAAA
ACATATGCTTATCGCGCAGGGGTGATCTTGGCAAATGAAAAAACAAACTACTGCGTCCCAATGGTTGCCTTCCCTGCCAT
CTTTAGCTCTACCATGCTACCGTACGAGCTAGCACGACTCAGCAAGACGCATGATGTGATTGTCAGCTCTGAAAAAAGGA
GAATGTCACTCACGGAGAACGCTGAGTATCTAAATAAGCAATTGCGTACAATTGGATTTGATATTCAAAGTAACTCTCAA
ATTATAGGCCTAGAAACTGGAGAGGTTGAGAATACAATCAAAGTGAGAAACTTCTTCGAAGAGAACGGAGTGTTTGGTTC
AGTCTTTGCACCACCAGCCACACCTAATAATAAACATATACTTCGTCTTTCAATAAATGCTAAGCATACCAAGCAGGATC
TCGATAGAGTGATCGAGGTATGCCGATTAGCTTGGAACAATGATGATTTGAACTTCGATTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(90-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

52.591

98.219

0.517