Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QUR98_RS16095 Genome accession   NZ_CP128578
Coordinates   3275761..3276390 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain VG38-53E1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3270761..3281390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUR98_RS16080 (QUR98_16080) helD 3271003..3273057 (-) 2055 WP_001350178.1 DNA helicase IV -
  QUR98_RS16085 (QUR98_16085) yccF 3273180..3273626 (+) 447 WP_001261236.1 YccF domain-containing protein -
  QUR98_RS16090 (QUR98_16090) yccS 3273636..3275798 (+) 2163 WP_000875008.1 YccS family putative transporter -
  QUR98_RS16095 (QUR98_16095) sxy/tfoX 3275761..3276390 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QUR98_RS16100 (QUR98_16100) sulA 3276609..3277118 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  QUR98_RS16105 (QUR98_16105) ompA 3277474..3278514 (+) 1041 WP_001518466.1 porin OmpA -
  QUR98_RS16110 (QUR98_16110) matP 3278590..3279042 (-) 453 WP_000877152.1 macrodomain Ter protein MatP -
  QUR98_RS16115 (QUR98_16115) ycbZ 3279228..3280988 (+) 1761 WP_000156492.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=774465 QUR98_RS16095 WP_000839153.1 3275761..3276390(-) (sxy/tfoX) [Escherichia coli strain VG38-53E1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=774465 QUR98_RS16095 WP_000839153.1 3275761..3276390(-) (sxy/tfoX) [Escherichia coli strain VG38-53E1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGTATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCAAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1