Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   PG915_RS14595 Genome accession   NZ_CP115920
Coordinates   3223066..3223584 (-) Length   172 a.a.
NCBI ID   WP_353497178.1    Uniprot ID   A0AAU8BJT2
Organism   Vibrio chaetopteri strain CB1-14     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3218066..3228584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG915_RS14565 (PG915_14545) - 3218822..3219331 (+) 510 WP_353497173.1 SprT family zinc-dependent metalloprotease -
  PG915_RS14570 (PG915_14550) endA 3219411..3220121 (+) 711 WP_353497174.1 deoxyribonuclease I -
  PG915_RS14575 (PG915_14555) rsmE 3220201..3220932 (+) 732 WP_353497175.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  PG915_RS14580 (PG915_14560) gshB 3220945..3221892 (+) 948 WP_353497176.1 glutathione synthase -
  PG915_RS14585 (PG915_14565) - 3221925..3222494 (+) 570 WP_353497177.1 YqgE/AlgH family protein -
  PG915_RS14590 (PG915_14570) ruvX 3222554..3222979 (+) 426 WP_112478579.1 Holliday junction resolvase RuvX -
  PG915_RS14595 (PG915_14575) luxS 3223066..3223584 (-) 519 WP_353497178.1 S-ribosylhomocysteine lyase Regulator
  PG915_RS14600 (PG915_14580) gshA 3223716..3225305 (-) 1590 WP_353497179.1 glutamate--cysteine ligase -
  PG915_RS14605 (PG915_14585) - 3225410..3228268 (-) 2859 WP_353497180.1 M16 family metallopeptidase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19108.89 Da        Isoelectric Point: 4.8487

>NTDB_id=774463 PG915_RS14595 WP_353497178.1 3223066..3223584(-) (luxS) [Vibrio chaetopteri strain CB1-14]
MPLLDSFTVDHTKMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSERGIHTLEHLYAGFMRAHLNGEQVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLNAMQDVLKVESQNKIPELNEYQCGTAAMHSLDEAKAIAKNIIEAGIQVNKNDELA
LPESMLQELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=774463 PG915_RS14595 WP_353497178.1 3223066..3223584(-) (luxS) [Vibrio chaetopteri strain CB1-14]
ATGCCACTACTGGATAGCTTTACGGTAGACCACACTAAAATGCACGCTCCAGCGGTACGCGTTGCGAAAACAATGCAAAC
CCCTAAAGGCGATACAATTACTGTTTTCGACCTGCGTTTCACGGCTCCAAACAAGGACATCTTGTCTGAGCGTGGTATTC
ACACCCTAGAGCACCTATATGCTGGCTTCATGCGTGCGCACCTAAATGGTGAGCAGGTTGAGATCATCGATATCTCTCCA
ATGGGTTGTCGCACGGGCTTTTACATGAGCTTGATTGGTACGCCATCAGAGCAGCAAGTTGCTGATGCTTGGCTAAATGC
AATGCAAGACGTACTGAAAGTTGAGAGCCAGAACAAGATCCCTGAGCTTAATGAGTATCAGTGTGGTACTGCGGCGATGC
ACTCACTAGATGAAGCGAAAGCGATCGCTAAAAACATCATTGAAGCGGGCATTCAAGTGAATAAGAATGATGAACTTGCT
TTGCCTGAGTCTATGTTGCAAGAGCTGAAAGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

90.058

99.419

0.895