Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   PG915_RS09175 Genome accession   NZ_CP115920
Coordinates   2042367..2043788 (+) Length   473 a.a.
NCBI ID   WP_353496251.1    Uniprot ID   A0AAU8BFE7
Organism   Vibrio chaetopteri strain CB1-14     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2037367..2048788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG915_RS09160 (PG915_09155) - 2037642..2038991 (-) 1350 WP_353496248.1 Na+/H+ antiporter NhaC family protein -
  PG915_RS09165 (PG915_09160) - 2039115..2041190 (-) 2076 WP_353496249.1 putative bifunctional diguanylate cyclase/phosphodiesterase -
  PG915_RS09170 (PG915_09165) - 2041174..2042154 (-) 981 WP_353496250.1 ABC transporter substrate-binding protein -
  PG915_RS09175 (PG915_09170) sbcB 2042367..2043788 (+) 1422 WP_353496251.1 exodeoxyribonuclease I Machinery gene
  PG915_RS09180 (PG915_09175) - 2043880..2044245 (+) 366 WP_353496252.1 CidA/LrgA family protein -
  PG915_RS09185 (PG915_09180) - 2044247..2044933 (+) 687 WP_353496253.1 CidB/LrgB family autolysis modulator -
  PG915_RS09190 (PG915_09185) cdd 2045099..2045986 (+) 888 WP_353496254.1 cytidine deaminase -
  PG915_RS09195 (PG915_09190) purT 2046148..2047323 (+) 1176 WP_353496255.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  PG915_RS09200 (PG915_09195) - 2047407..2047763 (-) 357 WP_353496256.1 VOC family protein -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54471.70 Da        Isoelectric Point: 4.8049

>NTDB_id=774457 PG915_RS09175 WP_353496251.1 2042367..2043788(+) (sbcB) [Vibrio chaetopteri strain CB1-14]
MSQHQPTFFFFDYETWGVSPAKDRPCQFAGVRTDADFNIIGEPLVIYCQPPADYLPSPEAALITGITPQLCQEKGLSEPE
FIAKIHEQLATPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPDGIEWPENEEGFTS
FKLEHLSVANGIEHENAHDAMADVIATIELAKKVKAAQPKLFDYFYSMRQKRKLNELVDIVNMTPLMHVSGMLGKECQYT
SWVVPIAWHPTNQNAVIVADLAKDPQPLLDLDVEALHQRLYTKRDELGQDELPVPLKLIHLNKCPILAPAKTLTAENAAN
IGIDREQCLKNLALIKQHPEVREKLIGLYSIEREYAEDNDVDTQLYSGFFTPADKSAMDIIRETDPNNLSALDISFSDPR
IEPLLFRYRARHFAWTLDESEQARWTNHCREFFESRIEDYMLNMENLVHEHESDEKKLAILKSVYRYVERLVS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=774457 PG915_RS09175 WP_353496251.1 2042367..2043788(+) (sbcB) [Vibrio chaetopteri strain CB1-14]
ATGTCTCAGCACCAACCCACTTTTTTCTTCTTCGATTACGAAACTTGGGGGGTGAGCCCGGCGAAAGACAGGCCTTGTCA
GTTCGCTGGGGTAAGAACGGATGCAGACTTTAATATCATTGGCGAGCCTTTGGTCATTTATTGCCAACCACCCGCCGATT
ACCTTCCTTCACCAGAAGCCGCGCTCATTACCGGAATTACGCCTCAGCTATGCCAAGAAAAAGGGCTCTCGGAGCCTGAG
TTCATCGCCAAGATTCATGAACAATTAGCGACGCCAAATACCACCAGTCTCGGCTATAACAGCATTCGCTTTGACGATGA
AGTGACTCGATACACTTGCTACCGCAATTTCATCGATCCTTATGCTTGGAGCTGGCAAAACGGAAACTCTCGTTGGGATC
TACTCGATGTAATGAGAGCGTGTCACGCACTGCGCCCAGATGGTATTGAGTGGCCAGAAAATGAAGAAGGATTTACCAGC
TTCAAATTGGAGCACCTTTCTGTTGCCAACGGTATTGAGCATGAAAATGCTCACGATGCGATGGCCGATGTCATCGCTAC
TATTGAGCTCGCGAAAAAAGTTAAAGCGGCTCAGCCTAAGCTGTTTGATTATTTCTATTCAATGCGCCAAAAGCGCAAAT
TGAACGAGTTGGTTGATATCGTCAATATGACGCCACTAATGCACGTCTCAGGAATGCTCGGGAAAGAGTGTCAGTACACT
AGCTGGGTCGTACCAATTGCTTGGCATCCTACCAATCAAAACGCAGTTATTGTCGCGGATTTAGCGAAAGATCCTCAGCC
TTTGCTCGATCTTGATGTTGAAGCGCTGCACCAAAGACTCTACACCAAGCGCGATGAACTCGGTCAAGATGAGCTTCCGG
TGCCACTCAAACTTATTCACTTAAACAAGTGCCCAATTCTAGCGCCGGCCAAAACACTCACTGCCGAAAATGCAGCGAAC
ATTGGTATTGACCGAGAGCAGTGTTTAAAGAACCTTGCGCTTATTAAGCAGCATCCAGAAGTTCGTGAGAAGTTGATCGG
CCTCTACAGCATTGAACGTGAATATGCAGAAGACAATGATGTCGATACTCAACTCTACAGCGGATTCTTCACTCCTGCGG
ATAAAAGTGCGATGGATATTATTCGCGAGACAGATCCGAATAATCTGTCTGCATTAGACATTAGTTTTAGTGATCCTAGA
ATTGAACCTCTGCTATTCCGATATCGCGCGCGCCATTTCGCTTGGACGCTTGATGAGTCGGAGCAGGCAAGGTGGACAAA
TCATTGTCGTGAGTTTTTCGAAAGTCGTATTGAAGACTACATGCTAAATATGGAAAACTTAGTTCACGAACATGAGTCTG
ACGAGAAAAAGCTCGCCATACTAAAATCCGTCTACCGCTACGTGGAGCGTCTCGTTTCTTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(10-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(209-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

77.234

99.366

0.767