Detailed information NTG0774447

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PG915_RS03090
• Genome accession: NZ_CP115920
• Coordinates: 670719..671702 (+)
• Length: 327 a.a.
• NCBI ID: WP_353497819.1
• Uniprot ID: A0AAU8BK14
• Organism: Vibrio chaetopteri strain CB1-14
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 665719..676702

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PG915_RS03055 (PG915_03050)	ftsB	665772..666053 (+)	282	WP_353497812.1	cell division protein FtsB	-
PG915_RS03060 (PG915_03055)	ispD	666050..666760 (+)	711	WP_353497813.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
PG915_RS03065 (PG915_03060)	ispF	666757..667236 (+)	480	WP_353497814.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PG915_RS03070 (PG915_03065)	truD	667248..668225 (+)	978	WP_353497815.1	tRNA pseudouridine(13) synthase TruD	-
PG915_RS03075 (PG915_03070)	surE	668231..668998 (+)	768	WP_353497816.1	5'/3'-nucleotidase SurE	-
PG915_RS03080 (PG915_03075)	-	669002..669625 (+)	624	WP_353497817.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PG915_RS03085 (PG915_03080)	nlpD	669626..670600 (+)	975	WP_353497818.1	murein hydrolase activator NlpD	-
PG915_RS03090 (PG915_03085)	rpoS	670719..671702 (+)	984	WP_353497819.1	RNA polymerase sigma factor RpoS	Regulator
PG915_RS03095 (PG915_03090)	-	671773..672384 (-)	612	WP_353497820.1	TIGR04211 family SH3 domain-containing protein	-
PG915_RS03100 (PG915_03095)	-	672605..673867 (-)	1263	WP_353497821.1	inorganic phosphate transporter	-
PG915_RS03105 (PG915_03100)	-	673991..674671 (-)	681	WP_353497822.1	TIGR00153 family protein	-
PG915_RS03110 (PG915_03105)	-	674878..676395 (+)	1518	WP_353497823.1	inorganic triphosphatase	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37277.06 Da
• Isoelectric Point: 4.7159

>NTDB_id=774447 PG915_RS03090 WP_353497819.1 670719..671702(+) (rpoS) [Vibrio chaetopteri strain CB1-14]
MSISNAVTKNENFDANSETVDVVEPTLTNDDAATETEDKDLYDASAKSLDATQLYLGEIGFSPLLTAEEEVLYARRALKG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAHKLDKPVSDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDSTHSDP
EVSTQDDDIKSSLIHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLRDILVKQGLNMES
LFNFDDD

Nucleotide

• Length: 984 bp

>NTDB_id=774447 PG915_RS03090 WP_353497819.1 670719..671702(+) (rpoS) [Vibrio chaetopteri strain CB1-14]
ATGAGTATCAGCAATGCAGTAACCAAGAACGAAAACTTCGATGCCAACAGTGAGACTGTTGATGTTGTAGAACCTACACT
GACGAACGATGACGCCGCAACAGAGACTGAAGACAAGGATTTGTACGATGCCTCTGCGAAAAGCTTAGATGCCACCCAGC
TCTATCTCGGCGAAATCGGCTTTTCACCACTCTTGACCGCAGAAGAAGAAGTGCTCTATGCAAGACGTGCACTGAAAGGC
GATGAAGCAGCCCGTAAACGCATGATCGAAAGTAACTTGCGATTAGTGGTTAAGATCTCTCGACGCTACAGTAACCGTGG
TCTAGCGCTTCTTGATTTAATTGAAGAAGGCAATTTAGGTCTTATTCGTGCAGTAGAGAAATTCGACCCCGAGCGCGGCT
TCCGTTTCTCAACGTATGCGACGTGGTGGATACGCCAAACTATTGAGCGTGCTTTGATGAATCAAACACGCACGATTCGT
CTGCCTATCCATGTGGTAAAAGAGCTCAACATTTACCTACGTACAGCCCGTGAACTGTCCCAAAAGCTGGATCATGAGCC
AACAGCCGAAGAAATTGCACATAAGCTGGATAAACCGGTGAGCGACGTTTCCAAGATGCTGAGACTCAATGAACGTATCA
GTTCGGTTGATACGCCAATTGGTGGGGACGGTGAGAAAGCGCTGTTAGATATCATTCCGGATTCAACGCACTCAGATCCT
GAAGTCTCAACCCAAGATGACGATATTAAATCATCGCTTATTCACTGGCTTGATGAACTGAATCCAAAACAAAAAGAAGT
GTTGGCACGACGCTTTGGATTGCTAGGCTATGAGCCTTCAACCCTTGAAGAAGTTGGGCGAGAAATCAATCTTACTCGCG
AGCGTGTGCGTCAAATTCAAGTCGAAGGTCTACGTAGACTGCGTGACATTTTAGTCAAGCAAGGCTTGAATATGGAATCA
CTGTTTAACTTTGACGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (256-308)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 3 (Sigma70_r3) (168-241)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.533	100	0.853