Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   PG915_RS02205 Genome accession   NZ_CP115920
Coordinates   483479..484486 (-) Length   335 a.a.
NCBI ID   WP_112461353.1    Uniprot ID   A0AAU8BL42
Organism   Vibrio chaetopteri strain CB1-14     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 478479..489486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG915_RS02180 (PG915_02180) - 478884..479801 (-) 918 WP_353497693.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  PG915_RS02185 (PG915_02185) - 479992..480294 (+) 303 WP_353497694.1 GIY-YIG nuclease family protein -
  PG915_RS02190 (PG915_02190) hslU 480597..481934 (-) 1338 WP_353497695.1 HslU--HslV peptidase ATPase subunit -
  PG915_RS02195 (PG915_02195) hslV 482148..482690 (-) 543 WP_353497696.1 ATP-dependent protease subunit HslV -
  PG915_RS02200 (PG915_02200) - 482849..483397 (-) 549 WP_353497697.1 SPOR domain-containing protein -
  PG915_RS02205 (PG915_02205) cytR 483479..484486 (-) 1008 WP_112461353.1 DNA-binding transcriptional regulator CytR Regulator
  PG915_RS02215 (PG915_02210) priA 484779..486980 (-) 2202 WP_353497698.1 primosomal protein N' -
  PG915_RS02220 (PG915_02215) rpmE 487264..487482 (+) 219 WP_006071169.1 50S ribosomal protein L31 -
  PG915_RS02225 (PG915_02220) - 487834..489093 (+) 1260 WP_353497699.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36847.49 Da        Isoelectric Point: 6.1431

>NTDB_id=774437 PG915_RS02205 WP_112461353.1 483479..484486(-) (cytR) [Vibrio chaetopteri strain CB1-14]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQSKKRETSFVNLVFTKQADGMLLLGTDLPFDISKPEQKNLPPIVMACEFAPELELPTVHIDN
LTSAFEAVNYLSNLGHKRIAQIAGPDTAFLCRFRQQGYQQALRRAGLPMNPAYTVKGDFTFEAGARLVRTLLALPEPPTA
IFCHNDVMAIGAMQEAKKLGLRVPQDLSVVGFDDIQFAQYCDPPLTTVSQPRYEIGRQAMYMMLEVLKGADVRAGSRLLD
TELVIRDSAAPPRIL

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=774437 PG915_RS02205 WP_112461353.1 483479..484486(-) (cytR) [Vibrio chaetopteri strain CB1-14]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGCGTCTCAACGGCTACGGTTTCGAGAGCTTTGATGAACCCAGAAAA
AGTGTCATCTTCTACGCGTAAACGTGTTGAAGATGCTGTTTTGGAAGCTGGTTATTCTCCCAATTCACTCGCACGCAATC
TTCGCAGAAATGAATCCAAAACCATAGTGACGATTGTTCCCGACATTTGCGACCCGTATTTTTCCGAGATCATTCGTGGT
ATTGAAGATGCCGCAATGGAACATGGTTACCTAGTGTTACTGGGTGATAGTGGTCAGTCGAAAAAACGTGAAACCTCTTT
TGTAAATCTCGTGTTTACTAAACAGGCCGACGGTATGCTGCTACTCGGTACTGACCTACCGTTTGATATCAGCAAGCCTG
AGCAAAAAAACTTACCACCTATTGTGATGGCATGTGAATTTGCACCAGAGCTTGAGCTACCAACGGTTCACATTGATAAC
CTCACCTCAGCGTTTGAGGCGGTTAACTACCTTTCGAATTTAGGCCATAAGCGCATCGCACAAATCGCCGGTCCTGACAC
AGCATTCCTGTGCCGTTTTAGACAGCAAGGCTACCAACAAGCACTGCGCCGAGCTGGCCTGCCGATGAATCCAGCTTACA
CGGTTAAAGGTGACTTTACATTTGAAGCTGGCGCGCGATTGGTTCGTACCCTACTTGCCCTACCTGAACCACCAACCGCA
ATATTCTGTCACAACGATGTGATGGCGATTGGCGCAATGCAGGAAGCGAAGAAGCTTGGTCTGCGAGTTCCCCAAGACTT
ATCTGTAGTGGGCTTTGATGACATTCAATTTGCTCAATACTGCGATCCACCGTTAACCACCGTCTCTCAGCCACGATATG
AGATTGGTCGCCAAGCGATGTATATGATGCTTGAAGTACTCAAAGGCGCGGACGTTCGCGCAGGCTCTCGCTTATTGGAT
ACCGAACTTGTGATCCGCGACAGTGCGGCTCCTCCAAGAATCTTGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

88.855

99.104

0.881
  cytR Vibrio parahaemolyticus RIMD 2210633

87.688

99.403

0.872