Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PG911_RS17860 Genome accession   NZ_CP115918
Coordinates   3947755..3949116 (-) Length   453 a.a.
NCBI ID   WP_064967174.1    Uniprot ID   -
Organism   Tenacibaculum ovolyticum strain 20-4135-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3942755..3954116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG911_RS17845 (PG911_17845) - 3942788..3944254 (+) 1467 WP_271242043.1 FAD-dependent oxidoreductase -
  PG911_RS17850 (PG911_17850) - 3944275..3947064 (+) 2790 WP_271242044.1 transglycosylase domain-containing protein -
  PG911_RS17855 (PG911_17855) - 3947174..3947593 (+) 420 WP_064967173.1 DoxX family protein -
  PG911_RS17860 (PG911_17860) radA 3947755..3949116 (-) 1362 WP_064967174.1 DNA repair protein RadA Machinery gene
  PG911_RS17865 (PG911_17865) - 3949345..3950292 (-) 948 WP_064967175.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  PG911_RS17870 (PG911_17870) panD 3950298..3950648 (-) 351 WP_028888691.1 aspartate 1-decarboxylase -
  PG911_RS17875 (PG911_17875) panC 3950699..3951544 (-) 846 WP_271242045.1 pantoate--beta-alanine ligase -
  PG911_RS17880 (PG911_17880) - 3951641..3952459 (+) 819 WP_028888693.1 glycogen/starch synthase -
  PG911_RS17885 (PG911_17885) - 3952467..3954050 (+) 1584 WP_271242046.1 DUF4270 family protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49649.19 Da        Isoelectric Point: 7.7158

>NTDB_id=774426 PG911_RS17860 WP_064967174.1 3947755..3949116(-) (radA) [Tenacibaculum ovolyticum strain 20-4135-2]
MAKTKTTFFCQNCGAQHAQWSGQCKTCKEWNTIVEEVVQKEEKRTWKTPENSKKRISRPLKVEDIQLNVEERVETKNNEL
DTVLGGGIVKGAVVLLGGEPGIGKSTLLLQIALKIPQKVLYVSGEESQSQIKMRAERLEATNSNCLILTETNTQQIFKNI
EEVQPDVLVIDSIQTLHTSSIEASPGSVSQIRETSAELIKFAKETGTPVLLIGHINKDGHIAGPKILEHMVDVVLQFEGD
RNHTYRILRSQKNRFGSTAELGIYEMLSSGLREVSNPSEILISKKDADLSGTAIASTLEGVRPLMIEIQALVSTAVYGTP
QRSTTGYNLKRLHMILAVLEKRAGFKLGAKDVFLNVTGGIHVDDPAIDLAVVAAILSSNQDLAINPNVCFAAEVGLAGEI
RPVSKIDQRILEAEKLGYKTLVASKYNKISSKNHSIKLLLVGKIEEAFATLFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=774426 PG911_RS17860 WP_064967174.1 3947755..3949116(-) (radA) [Tenacibaculum ovolyticum strain 20-4135-2]
ATGGCTAAAACGAAGACTACTTTTTTCTGTCAAAATTGCGGAGCACAACATGCACAATGGAGTGGGCAATGTAAAACATG
TAAAGAATGGAATACTATTGTTGAAGAAGTAGTTCAGAAAGAAGAAAAAAGGACTTGGAAAACACCAGAGAATAGTAAGA
AAAGAATTTCAAGACCATTAAAAGTTGAAGACATTCAATTGAATGTTGAAGAGCGTGTTGAAACAAAAAATAACGAATTA
GATACCGTTTTAGGGGGAGGGATTGTAAAAGGAGCTGTTGTTTTGTTAGGTGGTGAACCAGGAATAGGTAAATCAACGTT
GCTATTGCAAATTGCTTTAAAAATTCCACAAAAGGTATTGTATGTTTCTGGGGAAGAAAGTCAGTCGCAAATTAAAATGC
GCGCCGAACGTTTAGAAGCAACAAATTCTAATTGCTTAATTCTTACGGAAACCAATACGCAGCAAATTTTTAAAAATATA
GAAGAGGTTCAACCAGATGTTTTGGTGATTGACTCTATTCAAACATTACACACAAGTTCTATTGAAGCATCACCAGGAAG
TGTTTCTCAAATACGTGAAACTTCAGCAGAATTAATAAAGTTTGCCAAAGAAACGGGAACTCCTGTTTTATTAATTGGGC
ATATTAATAAAGACGGGCATATTGCAGGGCCAAAGATTTTAGAACACATGGTTGATGTGGTTTTACAGTTCGAAGGTGAT
AGAAATCATACGTATAGAATTTTACGCTCGCAGAAAAACAGGTTTGGATCTACTGCTGAATTAGGAATTTACGAAATGCT
ATCAAGTGGATTGCGAGAAGTTTCGAATCCGTCTGAAATATTAATTTCTAAAAAGGATGCAGATTTAAGTGGAACCGCAA
TTGCATCAACTTTAGAAGGTGTGCGACCGTTAATGATTGAGATTCAAGCGTTGGTAAGTACCGCAGTTTATGGTACACCA
CAGCGATCTACAACTGGATATAATCTAAAAAGATTACACATGATTTTAGCTGTTTTAGAAAAAAGAGCAGGTTTTAAATT
AGGAGCTAAAGATGTGTTTTTAAATGTTACAGGTGGAATTCATGTTGATGACCCAGCAATTGATTTGGCTGTTGTTGCTG
CAATCTTATCATCAAACCAAGATTTAGCTATAAACCCAAATGTGTGTTTTGCTGCCGAAGTTGGTTTGGCTGGTGAAATA
CGACCGGTTTCTAAAATAGATCAACGTATTTTGGAGGCTGAAAAATTAGGGTATAAAACTTTGGTGGCTTCAAAGTATAA
TAAGATATCTTCAAAAAATCACAGTATAAAGCTACTTTTAGTTGGTAAAATTGAAGAGGCTTTTGCTACCTTGTTTGCTT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(331-427)

AAA domain (AAA_25)

(70-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

47.826

100

0.486
  radA Streptococcus pneumoniae R6

47.826

100

0.486
  radA Streptococcus pneumoniae TIGR4

47.826

100

0.486
  radA Streptococcus mitis NCTC 12261

47.826

100

0.486
  radA Streptococcus pneumoniae D39

47.826

100

0.486
  radA Streptococcus mitis SK321

47.609

100

0.483
  radA Bacillus subtilis subsp. subtilis str. 168

48.018

100

0.481