Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   PGN40_RS08770 Genome accession   NZ_CP115914
Coordinates   1753196..1754146 (+) Length   316 a.a.
NCBI ID   WP_019395381.1    Uniprot ID   A0A1X7E2V1
Organism   Priestia filamentosa strain AZC66     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1748196..1759146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGN40_RS08745 (PGN40_08745) thrS 1748254..1749450 (+) 1197 WP_053102077.1 threonine--tRNA ligase -
  PGN40_RS08750 (PGN40_08750) - 1749471..1749911 (-) 441 WP_040057914.1 DMT family transporter -
  PGN40_RS08755 (PGN40_08755) - 1750039..1750332 (+) 294 WP_040057913.1 hypothetical protein -
  PGN40_RS08760 (PGN40_08760) - 1750508..1750708 (-) 201 WP_019395379.1 cold-shock protein -
  PGN40_RS08765 (PGN40_08765) - 1751181..1752632 (+) 1452 WP_019395380.1 sugar porter family MFS transporter -
  PGN40_RS08770 (PGN40_08770) ceuB 1753196..1754146 (+) 951 WP_019395381.1 ABC transporter permease Machinery gene
  PGN40_RS08775 (PGN40_08775) - 1754139..1755089 (+) 951 WP_019395382.1 iron chelate uptake ABC transporter family permease subunit -
  PGN40_RS08780 (PGN40_08780) - 1755086..1755847 (+) 762 WP_019395383.1 ABC transporter ATP-binding protein -
  PGN40_RS08785 (PGN40_08785) - 1755935..1756888 (+) 954 WP_040057911.1 siderophore ABC transporter substrate-binding protein -
  PGN40_RS08790 (PGN40_08790) - 1757005..1757865 (+) 861 WP_040057910.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34792.14 Da        Isoelectric Point: 10.0313

>NTDB_id=774376 PGN40_RS08770 WP_019395381.1 1753196..1754146(+) (ceuB) [Priestia filamentosa strain AZC66]
MKKRYLVAALIVLSLVSLFVGVTNISPFDIKSWTKDEIEILLISRVPRLISIIIAGVSLSIAGLIMQQLTRNKFVSPTTA
GTMDSARFGILISLMLFSTAGPMVKMLVSFLFALLGTFIFMKILDRIKFKDKIFIPLVGLMFGNIVSSITTFFAYKNDLI
QNIASWLQGDFSTIITGQYELIYISVPVMILAYIYANKFTIAGMGEDFAVNLGLNYKKVVNIGLILVALISSVVLLTVGM
IPFLGLIVPNIVSIYAGDNLKKTLSHTALVGAIFVLLCDILGRVIIYPYEISIGLMVGVIGSGIFLYMLIRRKAYE

Nucleotide


Download         Length: 951 bp        

>NTDB_id=774376 PGN40_RS08770 WP_019395381.1 1753196..1754146(+) (ceuB) [Priestia filamentosa strain AZC66]
GTGAAGAAAAGGTATCTCGTTGCAGCACTAATCGTACTATCTCTTGTGTCCCTTTTTGTTGGGGTTACAAACATTAGCCC
TTTTGATATTAAAAGTTGGACAAAAGACGAAATAGAAATTCTCCTTATTAGTCGAGTACCACGGCTTATAAGCATTATCA
TTGCGGGAGTAAGTTTGAGTATTGCTGGACTTATTATGCAGCAGCTTACGCGAAATAAGTTCGTATCACCAACAACAGCA
GGAACAATGGACTCGGCTCGCTTTGGTATTCTAATTTCTCTTATGCTGTTTTCAACAGCAGGACCAATGGTAAAAATGCT
TGTGTCCTTTTTATTTGCTTTATTAGGCACGTTTATTTTTATGAAAATCTTAGACAGAATAAAATTTAAAGACAAAATTT
TCATTCCACTTGTTGGTCTTATGTTTGGAAATATTGTGAGCTCTATCACGACGTTTTTTGCTTATAAAAATGATCTTATT
CAAAACATTGCATCATGGCTTCAAGGAGATTTTTCTACTATTATTACAGGGCAATATGAACTCATCTACATAAGTGTTCC
TGTTATGATCCTAGCCTACATTTATGCAAATAAGTTTACAATCGCCGGAATGGGTGAAGATTTTGCAGTTAATTTAGGCT
TGAATTATAAAAAAGTCGTGAACATTGGTCTTATTCTCGTTGCTTTAATCTCATCCGTTGTTTTACTAACGGTTGGAATG
ATTCCTTTCTTAGGACTTATTGTTCCAAATATTGTGTCAATTTATGCTGGAGATAATTTAAAAAAGACACTTTCTCATAC
AGCATTAGTTGGAGCCATTTTTGTTCTCCTATGCGATATTTTAGGAAGAGTCATTATTTATCCATACGAGATTTCAATAG
GTTTAATGGTAGGGGTTATTGGAAGCGGAATTTTTCTGTACATGTTAATTAGGAGAAAGGCATATGAGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X7E2V1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.313

99.051

0.538