Detailed information NTG0774334

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QUC27_RS07025
• Genome accession: NZ_CP128507
• Coordinates: 1490500..1491504 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain WS27-3
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1485500..1496504

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QUC27_RS06995 (QUC27_06995)	fghA	1485592..1486443 (+)	852	WP_003098562.1	S-formylglutathione hydrolase	-
QUC27_RS07000 (QUC27_07000)	ispF	1486514..1486987 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QUC27_RS07005 (QUC27_07005)	truD	1486984..1488051 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
QUC27_RS07010 (QUC27_07010)	surE	1488039..1488788 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
QUC27_RS07015 (QUC27_07015)	-	1488821..1489456 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QUC27_RS07020 (QUC27_07020)	-	1489502..1490395 (+)	894	WP_023128658.1	peptidoglycan DD-metalloendopeptidase family protein	-
QUC27_RS07025 (QUC27_07025)	rpoS	1490500..1491504 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
QUC27_RS07030 (QUC27_07030)	fdxA	1491931..1492254 (-)	324	WP_003119354.1	ferredoxin FdxA	-
QUC27_RS07035 (QUC27_07035)	mutS	1492321..1494888 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
QUC27_RS07040 (QUC27_07040)	-	1495014..1496021 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=774334 QUC27_RS07025 WP_003113871.1 1490500..1491504(+) (rpoS) [Pseudomonas aeruginosa strain WS27-3]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=774334 QUC27_RS07025 WP_003113871.1 1490500..1491504(+) (rpoS) [Pseudomonas aeruginosa strain WS27-3]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653