NTDB

Overview

Name	radA	Type	Machinery gene
Locus tag	OW730_RS04175	Genome accession	NZ_CP115913
Coordinates	856102..857463 (+)	Length	453 a.a.
NCBI ID	WP_271227814.1	Uniprot ID	-
Organism	Oceanirhabdus sp. W0125-5
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 851102..862463

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OW730_RS04160 (OW730_04160)	-	851956..852471 (+)	516	WP_271227811.1	UvrB/UvrC motif-containing protein	-
OW730_RS04165 (OW730_04165)	-	852484..853509 (+)	1026	WP_271227812.1	protein arginine kinase	-
OW730_RS04170 (OW730_04170)	-	853519..855957 (+)	2439	WP_271227813.1	ATP-dependent Clp protease ATP-binding subunit	-
OW730_RS04175 (OW730_04175)	radA	856102..857463 (+)	1362	WP_271227814.1	DNA repair protein RadA	Machinery gene
OW730_RS04180 (OW730_04180)	disA	857479..858543 (+)	1065	WP_271227815.1	DNA integrity scanning diadenylate cyclase DisA	-
OW730_RS04185 (OW730_04185)	-	858660..859082 (-)	423	WP_271227816.1	DUF1573 domain-containing protein	-
OW730_RS04190 (OW730_04190)	-	859230..859727 (+)	498	WP_271227817.1	CarD family transcriptional regulator	-
OW730_RS04195 (OW730_04195)	-	859813..860928 (+)	1116	WP_271227818.1	PIN/TRAM domain-containing protein	-
OW730_RS04200 (OW730_04200)	ispD	860930..861622 (+)	693	WP_271227819.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

Download Length: 453 a.a. Molecular weight: 50102.76 Da Isoelectric Point: 8.1533

                                >NTDB_id=774334 OW730_RS04175 WP_271227814.1 856102..857463(+) (radA) [Oceanirhabdus sp. W0125-5]

MAKIKSSFVCQECGYETPKWMGKCPDCGNWNSFIEEVKTKDIKHARAVTTTGSSKPEKITNIKSGEKERLDTNINELNRV

LGGGLVKGSLTLISGDPGIGKSTLLLQTASNIADKYGKVLYVSGEESEQQIKMRGDRLKANQENLYVVSETNIDTIEVHI

TNVEPSFVIIDSIQTLYKSNISSAPGSVSQVRECSNDLMRLAKGKQIPFFIVAHVTKQGELAGPRVLEHMVDTVLHFEGE

RTQEFRILRTIKNRFGTTSEIGVFEMRGEGLIEVENPSKVFLQDSEYAHEGSVVVGIVEGTRPVLVEMQSLVSQSNVPMP

RRTAVGVDKSRLNLVLAVLEKKFRVPFYDRDVYVNVVGGLNLDGTYGDLGLAISMISSHKNKPVKLEKAIIVGEIGLTGE

VRPVTHCEKIVNEAKKLGFENIIIPKKNLDKIKINDINIIGISNLRECLTKVF

Nucleotide

Download Length: 1362 bp

                                >NTDB_id=774334 OW730_RS04175 WP_271227814.1 856102..857463(+) (radA) [Oceanirhabdus sp. W0125-5]

ATGGCAAAAATTAAAAGTAGTTTCGTTTGTCAAGAATGTGGATATGAAACTCCTAAATGGATGGGGAAATGTCCTGATTG

CGGTAATTGGAATAGTTTTATTGAAGAAGTTAAAACTAAAGATATAAAACATGCAAGAGCAGTTACTACAACAGGCAGCA

GTAAGCCAGAGAAAATAACAAATATTAAATCAGGTGAAAAAGAACGCCTAGATACAAATATAAATGAATTAAATAGAGTA

CTTGGTGGCGGATTAGTTAAAGGCTCCTTGACTCTCATTTCAGGTGATCCAGGAATAGGAAAATCCACATTGCTGCTTCA

AACAGCTAGTAACATAGCAGATAAATATGGAAAGGTTCTTTATGTTTCAGGAGAAGAATCGGAGCAACAAATTAAAATGA

GGGGAGATAGATTAAAAGCTAATCAAGAGAATCTGTATGTTGTTTCAGAGACTAATATAGATACAATTGAAGTACATATT

ACTAATGTTGAACCAAGTTTTGTTATAATAGATTCAATTCAAACATTGTACAAGAGCAATATATCTTCGGCACCGGGAAG

TGTTTCGCAAGTTAGAGAATGTTCTAATGACTTGATGAGATTAGCTAAGGGAAAGCAAATACCATTCTTTATTGTGGCTC

ATGTAACTAAACAAGGTGAATTAGCAGGGCCTAGAGTACTGGAACATATGGTTGATACAGTGCTTCATTTTGAGGGAGAG

AGAACACAAGAATTTCGAATTTTGAGAACTATAAAGAATAGATTTGGAACAACAAGTGAAATTGGAGTTTTTGAAATGCG

TGGTGAAGGACTTATTGAAGTTGAAAATCCTTCAAAGGTATTTTTGCAAGACTCAGAATATGCTCATGAGGGGTCTGTGG

TAGTTGGAATAGTTGAAGGAACAAGGCCCGTTCTTGTAGAAATGCAATCTCTTGTTAGTCAAAGTAATGTTCCTATGCCA

AGAAGAACTGCTGTCGGGGTTGATAAATCTAGACTTAATCTTGTTTTGGCAGTTTTAGAAAAGAAATTCAGGGTACCATT

TTATGATAGAGATGTATATGTAAATGTAGTTGGCGGATTGAACCTAGATGGTACATATGGAGATTTAGGTTTGGCGATTT

CTATGATTTCAAGCCATAAAAATAAACCTGTAAAGCTTGAAAAAGCTATAATAGTAGGGGAAATTGGATTAACTGGAGAG

GTAAGACCAGTGACACATTGTGAGAAAATTGTAAATGAAGCTAAAAAATTAGGATTTGAAAACATAATAATTCCAAAGAA

AAATTTGGATAAGATTAAAATTAATGATATAAATATAATAGGCATTTCAAATTTGAGGGAATGTTTGACTAAAGTATTTT

AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(337-428)

AAA domain (AAA_25)

(63-219)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radA	Bacillus subtilis subsp. subtilis str. 168	53.642	100	0.536
radA	Streptococcus pneumoniae Rx1	50.661	100	0.508
radA	Streptococcus pneumoniae D39	50.661	100	0.508
radA	Streptococcus pneumoniae R6	50.661	100	0.508
radA	Streptococcus pneumoniae TIGR4	50.661	100	0.508
radA	Streptococcus mitis NCTC 12261	50.661	100	0.508
radA	Streptococcus mitis SK321	50.661	100	0.508

Detailed information NTG0774334