Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   H7R77_RS18745 Genome accession   NZ_AP022254
Coordinates   4073154..4074593 (-) Length   479 a.a.
NCBI ID   WP_039040474.1    Uniprot ID   -
Organism   Aeromonas caviae strain WP8-S18-ESBL-04     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4068154..4079593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R77_RS18715 (WP8S18E04_36260) - 4068434..4069174 (+) 741 WP_182976118.1 KDGP aldolase family protein -
  H7R77_RS18720 (WP8S18E04_36270) - 4069277..4071181 (+) 1905 WP_182976119.1 transcription antiterminator -
  H7R77_RS18725 (WP8S18E04_36280) npr 4071197..4071469 (-) 273 WP_010675868.1 PTS phosphocarrier protein NPr -
  H7R77_RS18730 (WP8S18E04_36290) rapZ 4071490..4072356 (-) 867 WP_010675869.1 RNase adapter RapZ -
  H7R77_RS18735 (WP8S18E04_36300) ptsN 4072397..4072843 (-) 447 WP_010675870.1 PTS IIA-like nitrogen regulatory protein PtsN -
  H7R77_RS18740 (WP8S18E04_36310) hpf 4072846..4073133 (-) 288 WP_005305957.1 ribosome hibernation promoting factor -
  H7R77_RS18745 (WP8S18E04_36320) rpoN/rpoN1 4073154..4074593 (-) 1440 WP_039040474.1 RNA polymerase factor sigma-54 Machinery gene
  H7R77_RS18750 (WP8S18E04_36330) lptB 4074659..4075384 (-) 726 WP_010675872.1 LPS export ABC transporter ATP-binding protein -
  H7R77_RS18755 (WP8S18E04_36340) lptA 4075397..4075915 (-) 519 WP_010675873.1 lipopolysaccharide transport periplasmic protein LptA -
  H7R77_RS18760 (WP8S18E04_36350) lptC 4075902..4076462 (-) 561 WP_010675874.1 LPS export ABC transporter periplasmic protein LptC -
  H7R77_RS18765 (WP8S18E04_36360) kdsC 4076459..4077013 (-) 555 WP_042864828.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  H7R77_RS18770 (WP8S18E04_36370) - 4077013..4078008 (-) 996 WP_029314845.1 KpsF/GutQ family sugar-phosphate isomerase -
  H7R77_RS18775 (WP8S18E04_36380) mlaF 4078215..4079015 (+) 801 WP_029314846.1 phospholipid ABC transporter ATP-binding protein MlaF -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53761.57 Da        Isoelectric Point: 4.3728

>NTDB_id=77429 H7R77_RS18745 WP_039040474.1 4073154..4074593(-) (rpoN/rpoN1) [Aeromonas caviae strain WP8-S18-ESBL-04]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENEAQETSQTETQDASQLDSSDAMAQESMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTATLED
IQAAVSSEEVEVELDEIEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLDEAREVIREHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQQLEPRPGNGIIQSESQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNEAYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=77429 H7R77_RS18745 WP_039040474.1 4073154..4074593(-) (rpoN/rpoN1) [Aeromonas caviae strain WP8-S18-ESBL-04]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCACAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACCCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGACAACAACCCTTTGCTGGAGCAAGAGGAGAACGAGG
CGCAGGAAACCAGTCAGACAGAGACACAGGACGCCAGTCAACTCGACTCCAGCGATGCCATGGCCCAGGAGAGCATGCCG
GATGAACTGCCGGTGGACACCACCTGGGACGAGGTCTACTCGGCCGGTACGGCCCAGAGTGCAGGCCCCATCCATGACGG
GGAAGACAGCGTCTATCAGGGGGAGACCACCGAGAATCTGCAGGACTACCTGCTGTGGCAGATGCGGCTCACCCCGTTCA
GTGATGTGGATGCTGCCATCGCGCTTGCCATCATCGATGCCATCGACGAATCCGGGTATCTGACTGCCACCCTCGAGGAT
ATTCAGGCTGCAGTCAGCAGCGAGGAGGTAGAAGTCGAACTGGATGAGATAGAAGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATCGCCGCCCGTTCGGTGCAAGAGTGTCTGCTGATCCAGCTCGGCCAGTATTCGCCGGACCTGCCCT
GGCTCGACGAAGCCAGAGAGGTGATCCGCGAACACATGGACCTGCTCGGCAATCGCGACTACCGCACCCTGGCTCGCAAG
ACCCGCCTCAAGGAGAGCGATCTCAAGGAGGTGCTGGATCTCATCCAGCAACTAGAGCCCAGACCCGGCAACGGCATCAT
CCAGAGTGAATCCCAGTACGTGATCCCGGATGTGTCCGTGGTCAAGAAGGGTAGCAAGTGGGTGGTTGAACTCAATCCGG
ATTCTGCTCCGCGCATCCGTGTCAACGAGGCCTATGCGGCCATGGCGCGCAATGCCCGCAGCAGCACGGATACCCAGTTC
ATCCGTTCTCATTTGCAGGAGGCCAAGTGGTTCATCAAGAGCCTGGAGAGTCGTAACGACACCCTGCTCAAGGTGGCCAG
CTGCATCGTCGAGCAGCAGCAGGGCTTTTTCGAGTACGGCGAAGAGGCCATGAAACCCATGGTACTCAACGACATCGCGG
AAGCGGTGGAGATGCATGAGTCGACCATTTCACGGGTCACGACCCAGAAGTACATGCATACGCCCCGCGGCATTTTTGAA
CTGAAGTTTTTTTTCTCCAGTCACGTCAATACGGAGGGAGGAGGAGAGTGCTCATCGACCGCTATTCGCGCCCTGATCAA
GAAGCTGGTGACGGCGGAAAACCCCGCCAAGCCGCTTAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.472

100

0.482

Multiple sequence alignment