Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   OK782_RS02345 Genome accession   NZ_CP115904
Coordinates   448568..449509 (+) Length   313 a.a.
NCBI ID   WP_003694978.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain MS11 HL-1-22     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 443568..454509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OK782_RS02320 (OK782_02320) - 444224..444733 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  OK782_RS02325 (OK782_02325) - 444963..445544 (-) 582 WP_003687910.1 superoxide dismutase -
  OK782_RS02330 (OK782_02330) dnaB 445708..447114 (+) 1407 WP_003694974.1 replicative DNA helicase -
  OK782_RS02335 (OK782_02335) pilH 447269..447931 (+) 663 WP_003687912.1 GspH/FimT family pseudopilin Machinery gene
  OK782_RS02340 (OK782_02340) pilI 447963..448571 (+) 609 WP_003694976.1 type IV pilus modification protein PilV Machinery gene
  OK782_RS02345 (OK782_02345) pilJ 448568..449509 (+) 942 WP_003694978.1 PilW family protein Machinery gene
  OK782_RS02350 (OK782_02350) pilK 449488..450099 (+) 612 WP_003687918.1 pilus assembly PilX family protein Machinery gene
  OK782_RS02355 (OK782_02355) pilL 450101..450574 (+) 474 WP_025455870.1 PilX family type IV pilin Machinery gene
  OK782_RS02360 (OK782_02360) - 450644..450952 (-) 309 WP_010951048.1 AzlD family protein -
  OK782_RS02365 (OK782_02365) - 450949..451656 (-) 708 Protein_462 AzlC family ABC transporter permease -
  OK782_RS02370 (OK782_02370) dut 451822..452274 (+) 453 WP_003687923.1 dUTP diphosphatase -
  OK782_RS02375 (OK782_02375) dapC 452352..453539 (+) 1188 WP_003687924.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 34386.09 Da        Isoelectric Point: 9.1948

>NTDB_id=774276 OK782_RS02345 WP_003694978.1 448568..449509(+) (pilJ) [Neisseria gonorrhoeae strain MS11 HL-1-22]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAEQQDLRNAATLIVRDARMAGSFG
CFNMSEHIGNDVVFNVAQKNALFSLKRNSTNSTNKLIPITESPNINYQNFFQVSSALIFQYGIDDVDASADTTVVSSCAA
ISKPGKQIPTLENAKKELKIQNSDKEQNGNIARQRHVVNAYAVGKIAGEEGLFRFQLDDKGKWGNPQLLAKKVKRMRVRY
IYVSGCPEDEDAGKEEQFKYTDKFDSSVTPAGVEVLLDSGSDAKIAASSDNIIYAYRINATIRGGNVCANRTL

Nucleotide


Download         Length: 942 bp        

>NTDB_id=774276 OK782_RS02345 WP_003694978.1 448568..449509(+) (pilJ) [Neisseria gonorrhoeae strain MS11 HL-1-22]
ATGAAACGTAAAATGCTAAACGTACCAAAAGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCGAGCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATATCGGAAATGATGTTGTTTTCAATGTGGCGCAAAAAAACGCTCTTTTTTCCTTAAAAAG
GAACAGTACAAACAGTACAAATAAACTTATCCCCATAACGGAATCTCCAAATATCAATTATCAGAATTTTTTCCAGGTTA
GTAGCGCATTGATTTTTCAATACGGAATCGATGATGTTGATGCAAGCGCCGATACTACCGTCGTCAGCAGCTGTGCCGCA
ATATCGAAACCGGGTAAGCAAATCCCTACTTTAGAAAATGCAAAAAAAGAATTGAAGATTCAGAATTCTGATAAGGAGCA
AAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAAGATTGCCGGTGAGGAAGGTTTGTTCC
GCTTCCAATTGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGGTTAAACGTATGAGAGTGCGGTAT
ATCTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATATACGGATAAATTCGACAGCTC
TGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGTAGTGATGCCAAGATTGCCGCTTCTTCAGATAATATTATTT
ATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACACTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

100

100

1