Detailed information
Bioinformatically predicted
Overview
| Name | pilJ | Type | Machinery gene |
| Locus tag | OK782_RS02345 | Genome accession | NZ_CP115904 |
| Coordinates | 448568..449509 (+) | Length | 313 a.a. |
| NCBI ID | WP_003694978.1 | Uniprot ID | - |
| Organism | Neisseria gonorrhoeae strain MS11 HL-1-22 | ||
| Function | type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 445708..501838 | 448568..449509 | within | 0 |
Gene organization within MGE regions
Location: 445708..501838
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OK782_RS02330 (OK782_02330) | dnaB | 445708..447114 (+) | 1407 | WP_003694974.1 | replicative DNA helicase | - |
| OK782_RS02335 (OK782_02335) | pilH | 447269..447931 (+) | 663 | WP_003687912.1 | GspH/FimT family pseudopilin | Machinery gene |
| OK782_RS02340 (OK782_02340) | pilI | 447963..448571 (+) | 609 | WP_003694976.1 | type IV pilus modification protein PilV | Machinery gene |
| OK782_RS02345 (OK782_02345) | pilJ | 448568..449509 (+) | 942 | WP_003694978.1 | PilW family protein | Machinery gene |
| OK782_RS02350 (OK782_02350) | pilK | 449488..450099 (+) | 612 | WP_003687918.1 | pilus assembly PilX family protein | Machinery gene |
| OK782_RS02355 (OK782_02355) | pilL | 450101..450574 (+) | 474 | WP_025455870.1 | PilX family type IV pilin | Machinery gene |
| OK782_RS02360 (OK782_02360) | - | 450644..450952 (-) | 309 | WP_010951048.1 | AzlD family protein | - |
| OK782_RS02365 (OK782_02365) | - | 450949..451656 (-) | 708 | Protein_462 | AzlC family ABC transporter permease | - |
| OK782_RS02370 (OK782_02370) | dut | 451822..452274 (+) | 453 | WP_003687923.1 | dUTP diphosphatase | - |
| OK782_RS02375 (OK782_02375) | dapC | 452352..453539 (+) | 1188 | WP_003687924.1 | succinyldiaminopimelate transaminase | - |
| OK782_RS02380 (OK782_02380) | yaaA | 453850..454629 (+) | 780 | WP_003694987.1 | peroxide stress protein YaaA | - |
| OK782_RS02395 (OK782_02395) | - | 455160..456356 (+) | 1197 | WP_017147117.1 | tyrosine-type recombinase/integrase | - |
| OK782_RS02400 (OK782_02400) | - | 456712..456981 (-) | 270 | WP_003687928.1 | hypothetical protein | - |
| OK782_RS02405 (OK782_02405) | - | 457176..457859 (-) | 684 | WP_003687929.1 | DUF2786 domain-containing protein | - |
| OK782_RS12080 | - | 458140..458406 (-) | 267 | Protein_469 | hypothetical protein | - |
| OK782_RS02415 (OK782_02415) | - | 458517..458732 (-) | 216 | WP_003691538.1 | hypothetical protein | - |
| OK782_RS02420 (OK782_02420) | - | 458784..459275 (-) | 492 | WP_003696912.1 | siphovirus Gp157 family protein | - |
| OK782_RS02425 (OK782_02425) | - | 459272..459454 (-) | 183 | WP_003691535.1 | hypothetical protein | - |
| OK782_RS02430 (OK782_02430) | - | 459598..460281 (-) | 684 | WP_271147237.1 | phage replication initiation protein, NGO0469 family | - |
| OK782_RS02435 (OK782_02435) | - | 460350..460511 (-) | 162 | WP_003693867.1 | hypothetical protein | - |
| OK782_RS02440 (OK782_02440) | - | 460508..460783 (-) | 276 | WP_003694990.1 | NGO1622 family putative holin | - |
| OK782_RS02445 (OK782_02445) | - | 460936..461268 (-) | 333 | WP_003694992.1 | hypothetical protein | - |
| OK782_RS02450 (OK782_02450) | - | 461410..461685 (-) | 276 | WP_003694994.1 | hypothetical protein | - |
| OK782_RS02455 (OK782_02455) | - | 461682..462158 (-) | 477 | WP_002255718.1 | DUF6948 domain-containing protein | - |
| OK782_RS02460 (OK782_02460) | - | 462191..462391 (-) | 201 | WP_003687954.1 | hypothetical protein | - |
| OK782_RS02465 (OK782_02465) | - | 462875..463093 (+) | 219 | WP_003691731.1 | hypothetical protein | - |
| OK782_RS02470 (OK782_02470) | - | 463110..463469 (-) | 360 | WP_003691733.1 | hypothetical protein | - |
| OK782_RS02475 (OK782_02475) | - | 463470..464009 (-) | 540 | WP_003695998.1 | Panacea domain-containing protein | - |
| OK782_RS02480 (OK782_02480) | - | 464169..464885 (-) | 717 | WP_003695999.1 | XRE family transcriptional regulator | - |
| OK782_RS02485 (OK782_02485) | - | 465266..465493 (+) | 228 | WP_003693879.1 | helix-turn-helix domain-containing protein | - |
| OK782_RS02490 (OK782_02490) | - | 465611..466675 (+) | 1065 | WP_003689134.1 | hypothetical protein | - |
| OK782_RS02495 (OK782_02495) | - | 466672..468033 (+) | 1362 | WP_003689132.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| OK782_RS02500 (OK782_02500) | - | 468050..468295 (+) | 246 | WP_017147114.1 | hypothetical protein | - |
| OK782_RS02505 (OK782_02505) | - | 468371..468826 (+) | 456 | WP_017147113.1 | DUF3310 domain-containing protein | - |
| OK782_RS02510 (OK782_02510) | - | 468850..468999 (+) | 150 | WP_003689110.1 | hypothetical protein | - |
| OK782_RS02515 (OK782_02515) | - | 469028..469309 (+) | 282 | WP_003689109.1 | hypothetical protein | - |
| OK782_RS02520 (OK782_02520) | - | 469300..469680 (+) | 381 | WP_017147112.1 | RusA family crossover junction endodeoxyribonuclease | - |
| OK782_RS02525 (OK782_02525) | - | 469697..469825 (-) | 129 | WP_256263200.1 | hypothetical protein | - |
| OK782_RS02530 (OK782_02530) | - | 469947..470354 (+) | 408 | WP_003691430.1 | hypothetical protein | - |
| OK782_RS02535 (OK782_02535) | - | 470445..471605 (+) | 1161 | WP_003691428.1 | type I restriction endonuclease | - |
| OK782_RS02540 (OK782_02540) | - | 471887..472756 (+) | 870 | WP_003695486.1 | Bro-N domain-containing protein | - |
| OK782_RS02545 (OK782_02545) | - | 473049..473498 (+) | 450 | WP_003695485.1 | hypothetical protein | - |
| OK782_RS02550 (OK782_02550) | terL | 473560..474981 (+) | 1422 | WP_003689090.1 | phage terminase large subunit | - |
| OK782_RS02555 (OK782_02555) | - | 474978..477125 (+) | 2148 | WP_003691423.1 | phage portal protein | - |
| OK782_RS02560 (OK782_02560) | - | 477193..478350 (+) | 1158 | WP_003695482.1 | HK97 family phage prohead protease | - |
| OK782_RS02565 (OK782_02565) | - | 478392..479891 (+) | 1500 | WP_003691419.1 | hypothetical protein | - |
| OK782_RS02570 (OK782_02570) | - | 479898..480260 (+) | 363 | WP_003689082.1 | hypothetical protein | - |
| OK782_RS02575 (OK782_02575) | - | 480263..480793 (+) | 531 | WP_003689080.1 | head-tail connector protein | - |
| OK782_RS02580 (OK782_02580) | - | 480793..481275 (+) | 483 | WP_017147110.1 | HK97 gp10 family phage protein | - |
| OK782_RS02585 (OK782_02585) | - | 481272..481700 (+) | 429 | WP_003689076.1 | hypothetical protein | - |
| OK782_RS02590 (OK782_02590) | - | 481726..482499 (+) | 774 | WP_003692869.1 | hypothetical protein | - |
| OK782_RS02595 (OK782_02595) | - | 482560..482889 (+) | 330 | WP_003689072.1 | hypothetical protein | - |
| OK782_RS02600 (OK782_02600) | - | 482901..483167 (+) | 267 | WP_003689070.1 | hypothetical protein | - |
| OK782_RS02605 (OK782_02605) | - | 483167..483766 (+) | 600 | WP_003691415.1 | DUF2460 domain-containing protein | - |
| OK782_RS02610 (OK782_02610) | - | 483763..484617 (+) | 855 | WP_003689066.1 | DUF2163 domain-containing protein | - |
| OK782_RS02615 (OK782_02615) | - | 484619..485050 (+) | 432 | WP_003689064.1 | NlpC/P60 family protein | - |
| OK782_RS02620 (OK782_02620) | - | 485078..485356 (-) | 279 | WP_003689062.1 | helix-turn-helix domain-containing protein | - |
| OK782_RS02625 (OK782_02625) | - | 485596..489741 (+) | 4146 | WP_017147109.1 | phage tail protein | - |
| OK782_RS02630 (OK782_02630) | - | 489853..490158 (+) | 306 | WP_003689058.1 | hypothetical protein | - |
| OK782_RS02635 (OK782_02635) | - | 490229..490699 (+) | 471 | WP_003691410.1 | hypothetical protein | - |
| OK782_RS02640 (OK782_02640) | - | 490700..491032 (+) | 333 | WP_003691408.1 | hypothetical protein | - |
| OK782_RS02645 (OK782_02645) | - | 491388..491735 (-) | 348 | WP_003689051.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| OK782_RS02650 (OK782_02650) | - | 491735..491971 (-) | 237 | WP_003689049.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| OK782_RS02655 (OK782_02655) | - | 492011..492136 (+) | 126 | WP_255294325.1 | hypothetical protein | - |
| OK782_RS02660 (OK782_02660) | - | 492178..492717 (+) | 540 | WP_003695466.1 | TIGR02594 family protein | - |
| OK782_RS02665 (OK782_02665) | - | 492718..493062 (+) | 345 | WP_003695464.1 | hypothetical protein | - |
| OK782_RS02670 (OK782_02670) | - | 493046..493219 (+) | 174 | WP_017146757.1 | hypothetical protein | - |
| OK782_RS02675 (OK782_02675) | - | 493531..493680 (+) | 150 | WP_003691402.1 | hypothetical protein | - |
| OK782_RS02680 (OK782_02680) | - | 493710..496757 (+) | 3048 | WP_003695458.1 | tape measure protein | - |
| OK782_RS02685 (OK782_02685) | - | 496817..497296 (-) | 480 | WP_002241413.1 | DUF4760 domain-containing protein | - |
| OK782_RS02690 (OK782_02690) | - | 497638..498627 (-) | 990 | WP_003689040.1 | tyrosine-type recombinase/integrase | - |
| OK782_RS02695 (OK782_02695) | - | 498887..499075 (-) | 189 | WP_003689039.1 | hypothetical protein | - |
| OK782_RS02700 (OK782_02700) | purM | 499316..500350 (+) | 1035 | WP_003689038.1 | phosphoribosylformylglycinamidine cyclo-ligase | - |
Sequence
Protein
Download Length: 313 a.a. Molecular weight: 34386.09 Da Isoelectric Point: 9.1948
>NTDB_id=774276 OK782_RS02345 WP_003694978.1 448568..449509(+) (pilJ) [Neisseria gonorrhoeae strain MS11 HL-1-22]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAEQQDLRNAATLIVRDARMAGSFG
CFNMSEHIGNDVVFNVAQKNALFSLKRNSTNSTNKLIPITESPNINYQNFFQVSSALIFQYGIDDVDASADTTVVSSCAA
ISKPGKQIPTLENAKKELKIQNSDKEQNGNIARQRHVVNAYAVGKIAGEEGLFRFQLDDKGKWGNPQLLAKKVKRMRVRY
IYVSGCPEDEDAGKEEQFKYTDKFDSSVTPAGVEVLLDSGSDAKIAASSDNIIYAYRINATIRGGNVCANRTL
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAEQQDLRNAATLIVRDARMAGSFG
CFNMSEHIGNDVVFNVAQKNALFSLKRNSTNSTNKLIPITESPNINYQNFFQVSSALIFQYGIDDVDASADTTVVSSCAA
ISKPGKQIPTLENAKKELKIQNSDKEQNGNIARQRHVVNAYAVGKIAGEEGLFRFQLDDKGKWGNPQLLAKKVKRMRVRY
IYVSGCPEDEDAGKEEQFKYTDKFDSSVTPAGVEVLLDSGSDAKIAASSDNIIYAYRINATIRGGNVCANRTL
Nucleotide
Download Length: 942 bp
>NTDB_id=774276 OK782_RS02345 WP_003694978.1 448568..449509(+) (pilJ) [Neisseria gonorrhoeae strain MS11 HL-1-22]
ATGAAACGTAAAATGCTAAACGTACCAAAAGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCGAGCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATATCGGAAATGATGTTGTTTTCAATGTGGCGCAAAAAAACGCTCTTTTTTCCTTAAAAAG
GAACAGTACAAACAGTACAAATAAACTTATCCCCATAACGGAATCTCCAAATATCAATTATCAGAATTTTTTCCAGGTTA
GTAGCGCATTGATTTTTCAATACGGAATCGATGATGTTGATGCAAGCGCCGATACTACCGTCGTCAGCAGCTGTGCCGCA
ATATCGAAACCGGGTAAGCAAATCCCTACTTTAGAAAATGCAAAAAAAGAATTGAAGATTCAGAATTCTGATAAGGAGCA
AAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAAGATTGCCGGTGAGGAAGGTTTGTTCC
GCTTCCAATTGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGGTTAAACGTATGAGAGTGCGGTAT
ATCTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATATACGGATAAATTCGACAGCTC
TGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGTAGTGATGCCAAGATTGCCGCTTCTTCAGATAATATTATTT
ATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACACTTTGA
ATGAAACGTAAAATGCTAAACGTACCAAAAGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCGAGCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATATCGGAAATGATGTTGTTTTCAATGTGGCGCAAAAAAACGCTCTTTTTTCCTTAAAAAG
GAACAGTACAAACAGTACAAATAAACTTATCCCCATAACGGAATCTCCAAATATCAATTATCAGAATTTTTTCCAGGTTA
GTAGCGCATTGATTTTTCAATACGGAATCGATGATGTTGATGCAAGCGCCGATACTACCGTCGTCAGCAGCTGTGCCGCA
ATATCGAAACCGGGTAAGCAAATCCCTACTTTAGAAAATGCAAAAAAAGAATTGAAGATTCAGAATTCTGATAAGGAGCA
AAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAAGATTGCCGGTGAGGAAGGTTTGTTCC
GCTTCCAATTGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGGTTAAACGTATGAGAGTGCGGTAT
ATCTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATATACGGATAAATTCGACAGCTC
TGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGTAGTGATGCCAAGATTGCCGCTTCTTCAGATAATATTATTT
ATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACACTTTGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilJ | Neisseria gonorrhoeae MS11 |
100 |
100 |
1 |