Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   OK782_RS02350 Genome accession   NZ_CP115904
Coordinates   449488..450099 (+) Length   203 a.a.
NCBI ID   WP_003687918.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain MS11 HL-1-22     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 444488..455099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OK782_RS02325 (OK782_02325) - 444963..445544 (-) 582 WP_003687910.1 superoxide dismutase -
  OK782_RS02330 (OK782_02330) dnaB 445708..447114 (+) 1407 WP_003694974.1 replicative DNA helicase -
  OK782_RS02335 (OK782_02335) pilH 447269..447931 (+) 663 WP_003687912.1 GspH/FimT family pseudopilin Machinery gene
  OK782_RS02340 (OK782_02340) pilI 447963..448571 (+) 609 WP_003694976.1 type IV pilus modification protein PilV Machinery gene
  OK782_RS02345 (OK782_02345) pilJ 448568..449509 (+) 942 WP_003694978.1 PilW family protein Machinery gene
  OK782_RS02350 (OK782_02350) pilK 449488..450099 (+) 612 WP_003687918.1 pilus assembly PilX family protein Machinery gene
  OK782_RS02355 (OK782_02355) pilL 450101..450574 (+) 474 WP_025455870.1 PilX family type IV pilin Machinery gene
  OK782_RS02360 (OK782_02360) - 450644..450952 (-) 309 WP_010951048.1 AzlD family protein -
  OK782_RS02365 (OK782_02365) - 450949..451656 (-) 708 Protein_462 AzlC family ABC transporter permease -
  OK782_RS02370 (OK782_02370) dut 451822..452274 (+) 453 WP_003687923.1 dUTP diphosphatase -
  OK782_RS02375 (OK782_02375) dapC 452352..453539 (+) 1188 WP_003687924.1 succinyldiaminopimelate transaminase -
  OK782_RS02380 (OK782_02380) yaaA 453850..454629 (+) 780 WP_003694987.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22153.94 Da        Isoelectric Point: 5.3780

>NTDB_id=774277 OK782_RS02350 WP_003687918.1 449488..450099(+) (pilK) [Neisseria gonorrhoeae strain MS11 HL-1-22]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCEKGLCTAVNVRTNNNGNEEVFGNIVVQGTPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYEKGTGNVSKMP
RYIIEYLGEKNNQNIYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=774277 OK782_RS02350 WP_003687918.1 449488..450099(+) (pilK) [Neisseria gonorrhoeae strain MS11 HL-1-22]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAA
TGAAGAGGTTTTTGGCAATATCGTGGTGCAAGGCACGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATGAGAAAGGTACGGGAAACGTCAGCAAAATGCCG
CGTTATATTATCGAATATTTGGGCGAGAAGAATAACCAAAATATTTACAGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTGCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

100

100

1