Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   QUC24_RS09390 Genome accession   NZ_CP128506
Coordinates   1988565..1988894 (+) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Fe11-1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1983565..1993894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUC24_RS09375 (QUC24_09375) - 1984365..1985321 (+) 957 WP_003104579.1 SDR family oxidoreductase -
  QUC24_RS09380 (QUC24_09380) - 1985323..1986342 (+) 1020 WP_003158833.1 glycosyltransferase family 4 protein -
  QUC24_RS09385 (QUC24_09385) - 1986377..1988374 (+) 1998 WP_031684431.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  QUC24_RS09390 (QUC24_09390) comEA/comE1 1988565..1988894 (+) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  QUC24_RS09400 (QUC24_09400) - 1989111..1990307 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  QUC24_RS09405 (QUC24_09405) uvrB 1990495..1992507 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=774235 QUC24_RS09390 WP_003091430.1 1988565..1988894(+) (comEA/comE1) [Pseudomonas aeruginosa strain Fe11-1]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=774235 QUC24_RS09390 WP_003091430.1 1988565..1988894(+) (comEA/comE1) [Pseudomonas aeruginosa strain Fe11-1]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385