Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QUC25_RS18020 Genome accession   NZ_CP128505
Coordinates   3910193..3910789 (-) Length   198 a.a.
NCBI ID   WP_003087237.1    Uniprot ID   Q9I3H9
Organism   Pseudomonas aeruginosa strain Fe8-1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3905193..3915789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUC25_RS17995 (QUC25_17995) - 3905539..3905736 (-) 198 Protein_3563 TetR family transcriptional regulator -
  QUC25_RS18000 (QUC25_18000) - 3905829..3907412 (+) 1584 WP_003121915.1 NAD(P)/FAD-dependent oxidoreductase -
  QUC25_RS18005 (QUC25_18005) - 3907409..3908296 (+) 888 WP_023099751.1 SDR family NAD(P)-dependent oxidoreductase -
  QUC25_RS18010 (QUC25_18010) - 3908370..3908909 (+) 540 WP_023099752.1 CbrC family protein -
  QUC25_RS18015 (QUC25_18015) - 3908922..3910070 (-) 1149 WP_043085824.1 acyl-CoA dehydrogenase family protein -
  QUC25_RS18020 (QUC25_18020) recR 3910193..3910789 (-) 597 WP_003087237.1 recombination mediator RecR Machinery gene
  QUC25_RS18025 (QUC25_18025) - 3910868..3911194 (-) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  QUC25_RS18030 (QUC25_18030) dnaX 3911240..3913345 (-) 2106 WP_289344308.1 DNA polymerase III subunit gamma/tau -
  QUC25_RS18035 (QUC25_18035) - 3913382..3914248 (+) 867 WP_023657576.1 ABC transporter substrate-binding protein -
  QUC25_RS18045 (QUC25_18045) - 3914502..3914879 (-) 378 WP_003083354.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21173.42 Da        Isoelectric Point: 6.0063

>NTDB_id=774161 QUC25_RS18020 WP_003087237.1 3910193..3910789(-) (recR) [Pseudomonas aeruginosa strain Fe8-1]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRQCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=774161 QUC25_RS18020 WP_003087237.1 3910193..3910789(-) (recR) [Pseudomonas aeruginosa strain Fe8-1]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCAGTGCCGTACCCTCAGCGAGGAGGAGCTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCGCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTGGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGTGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5Z2V

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48