Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   QUC25_RS02300 Genome accession   NZ_CP128505
Coordinates   482139..482504 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain Fe8-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 477139..487504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUC25_RS02270 (QUC25_02270) pyrR 477761..478273 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  QUC25_RS02275 (QUC25_02275) ruvX 478385..478819 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  QUC25_RS02280 (QUC25_02280) - 478819..479388 (-) 570 WP_003084577.1 YqgE/AlgH family protein -
  QUC25_RS02285 (QUC25_02285) - 479437..480330 (-) 894 WP_289344460.1 energy transducer TonB -
  QUC25_RS02290 (QUC25_02290) gshB 480477..481430 (-) 954 WP_009875724.1 glutathione synthase -
  QUC25_RS02295 (QUC25_02295) pilG 481685..482092 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  QUC25_RS02300 (QUC25_02300) pilH 482139..482504 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  QUC25_RS02305 (QUC25_02305) - 482555..483091 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  QUC25_RS02310 (QUC25_02310) pilJ 483176..485224 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  QUC25_RS02315 (QUC25_02315) pilK 485285..486160 (+) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=774121 QUC25_RS02300 WP_003084587.1 482139..482504(+) (pilH) [Pseudomonas aeruginosa strain Fe8-1]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=774121 QUC25_RS02300 WP_003084587.1 482139..482504(+) (pilH) [Pseudomonas aeruginosa strain Fe8-1]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAGTTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364