Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   QTN46_RS21290 Genome accession   NZ_CP128501
Coordinates   3940545..3941339 (-) Length   264 a.a.
NCBI ID   WP_013354215.1    Uniprot ID   A0A9P1JLP7
Organism   Bacillus amyloliquefaciens strain SRCM123386     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3935545..3946339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN46_RS21270 (QTN46_21270) - 3935666..3937084 (-) 1419 WP_014471292.1 HAMP domain-containing sensor histidine kinase -
  QTN46_RS21275 (QTN46_21275) - 3937081..3937764 (-) 684 WP_013354212.1 response regulator transcription factor -
  QTN46_RS21280 (QTN46_21280) - 3937978..3938889 (+) 912 WP_013354213.1 PepSY domain-containing protein -
  QTN46_RS21285 (QTN46_21285) htrA 3939262..3940458 (-) 1197 WP_289394047.1 S1C family serine protease Regulator
  QTN46_RS21290 (QTN46_21290) vicX 3940545..3941339 (-) 795 WP_013354215.1 MBL fold metallo-hydrolase Regulator
  QTN46_RS21295 (QTN46_21295) yycI 3941355..3942194 (-) 840 WP_289394048.1 two-component system regulatory protein YycI -
  QTN46_RS21300 (QTN46_21300) yycH 3942181..3943539 (-) 1359 WP_289394049.1 two-component system activity regulator YycH -
  QTN46_RS21305 (QTN46_21305) walK 3943529..3945364 (-) 1836 WP_013354218.1 cell wall metabolism sensor histidine kinase WalK -
  QTN46_RS21310 (QTN46_21310) walR 3945371..3946078 (-) 708 WP_004393104.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29116.16 Da        Isoelectric Point: 5.7992

>NTDB_id=774102 QTN46_RS21290 WP_013354215.1 3940545..3941339(-) (vicX) [Bacillus amyloliquefaciens strain SRCM123386]
MGLQFSVLASGSTGNAFYLETEEHSFLVDAGLSGKAMDGLMEQIGRKIDDVDGIFVTHEHSDHIKGLGVIARKYGLPVYA
NEKTWKAMENQIGKLDTGQKFLFPMESVKSFGGLDVESFGVSHDAAEPMFYVFHYQGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDGTSRIYLAHLSQDNNMKELARMSVQQTLAAK
GFVAGETFQLFDTDPKIPTPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=774102 QTN46_RS21290 WP_013354215.1 3940545..3941339(-) (vicX) [Bacillus amyloliquefaciens strain SRCM123386]
ATGGGCTTGCAATTTAGCGTGCTTGCGAGCGGGAGTACCGGAAACGCGTTTTATCTGGAGACAGAGGAGCACTCCTTTCT
GGTGGATGCCGGCCTGAGCGGAAAAGCGATGGACGGGCTGATGGAGCAAATCGGCCGTAAGATAGACGACGTGGACGGCA
TCTTTGTCACTCATGAGCACAGCGACCATATTAAAGGGCTCGGCGTCATTGCGAGAAAGTACGGTCTTCCGGTATACGCC
AATGAAAAGACGTGGAAAGCGATGGAGAATCAGATCGGCAAGCTGGACACCGGACAAAAGTTTTTGTTCCCGATGGAAAG
CGTGAAATCCTTCGGCGGGCTTGATGTTGAGTCATTCGGCGTCTCTCATGACGCGGCCGAGCCGATGTTCTATGTTTTCC
ACTACCAAGGCAGAAAGCTCGCGCTGATGACGGACACCGGTTATGTGAGCGACAGAATGAAGGGCATTATCCGTTCGGCC
AATGTGTTTGTGTTTGAAAGCAACCATGACGTCGGCATGCTGCAAATGGGCAGATACCCATGGAGCATTAAACGGCGGAT
TTTAAGCGATGTCGGCCACGTCTCAAATGAAGACGCGGCGCTCGCCATGACTGATGTCATCGGCGACGGCACATCACGCA
TCTACTTGGCGCATCTGAGCCAAGACAACAATATGAAGGAACTGGCGAGAATGTCCGTGCAGCAGACATTGGCTGCAAAA
GGATTTGTCGCGGGGGAAACGTTTCAATTATTTGATACCGATCCGAAAATCCCGACGCCTCTGTGCGCCGTGTAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JLP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

52.852

99.621

0.527