Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   QTN46_RS17700 Genome accession   NZ_CP128501
Coordinates   3250014..3252329 (-) Length   771 a.a.
NCBI ID   WP_289393903.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SRCM123386     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3245014..3257329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN46_RS17690 (QTN46_17690) cysI 3246288..3248003 (-) 1716 WP_014471010.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit -
  QTN46_RS17695 (QTN46_17695) - 3248031..3249839 (-) 1809 WP_289393902.1 assimilatory sulfite reductase (NADPH) flavoprotein subunit -
  QTN46_RS17700 (QTN46_17700) helD 3250014..3252329 (-) 2316 WP_289393903.1 RNA polymerase recycling motor HelD Machinery gene
  QTN46_RS17705 (QTN46_17705) - 3252483..3253091 (-) 609 WP_013353603.1 trimeric intracellular cation channel family protein -
  QTN46_RS17710 (QTN46_17710) - 3253317..3254117 (+) 801 WP_013353604.1 zinc-dependent metalloprotease -
  QTN46_RS17715 (QTN46_17715) - 3254151..3254570 (-) 420 WP_013353605.1 disulfide oxidoreductase -
  QTN46_RS17720 (QTN46_17720) - 3254560..3255231 (-) 672 WP_013353606.1 DsbA family protein -

Sequence

Protein


Download         Length: 771 a.a.        Molecular weight: 88478.69 Da        Isoelectric Point: 6.2478

>NTDB_id=774082 QTN46_RS17700 WP_289393903.1 3250014..3252329(-) (helD) [Bacillus amyloliquefaciens strain SRCM123386]
MAKRDEEWKEEQGRINFVMKELDQKETRLEASSGGLKQDIVGLRKTFWDDVTVNLDDAHEAAETFSSIKQQAEMLSERER
THRLQYRQLQKIQKLKASPYFGRVDFTEKGESSSERIYIGLTSLMDENNEQFLIYDWRAPISSLYYQYSPGKARYEVPDE
IIEGDITLKRQFIIKNGTLKAMFNTDMTIGDEMLQEVLSEHSGRHMKNIVSTIQKEQNEIIRDEKSKYLIVQGAAGSGKT
SAALQRAAYLLYRGRGVLDARQIVLFSPNILFNSYVSAVLPELGEENMEQATFQEYIARRLGRKFDCESPYEQLEYCLTE
QNQDALFVRLTAIAYKASSAFRTMIDRYAGSLSVSGLMCKQVSFRGEMLISKERIEDYFYSLDQQLPIPNRAELTAEWLL
AEISALEKKERKKEWVLQESELLDKEDYAQVYQKLKKQEADDEPAFDDHQREQRLLGAIIVGKAFKPIKQAVRQLGFLDI
NRMYLRLFSDWGSYEKPDQWQSIGALTRKAFAEQSLPYEDAAPYLYLQDLIEGKRKNTQMKHVFIDEAQDYSPFQLTYIQ
SIFPAAKMTVLGDIIQSIYAHTITGPSSLAGCFRNGAEKYVSLKRTYRSTRQIVEFTKALLDDGDDIEPFNRNGEKPRVL
RADTEKARQEQLTETIRELRKKGWETIAVICKTAAEAKKVFQAASVASDVRLINKENQPFQKGVCVIPVYLAKGIEFDAV
IVADASVTQYKSQHDRKLLYTACTRAMHHLTVLSPGETSPFIKEVPAGLFV

Nucleotide


Download         Length: 2316 bp        

>NTDB_id=774082 QTN46_RS17700 WP_289393903.1 3250014..3252329(-) (helD) [Bacillus amyloliquefaciens strain SRCM123386]
ATGGCAAAACGTGATGAAGAATGGAAAGAAGAGCAGGGACGAATCAATTTTGTAATGAAAGAACTGGATCAGAAAGAAAC
GCGTCTTGAAGCATCATCGGGCGGATTGAAGCAGGATATTGTCGGCCTGAGAAAAACGTTCTGGGATGATGTCACCGTGA
ATTTGGATGACGCCCATGAAGCGGCGGAAACATTTTCAAGCATCAAACAGCAGGCGGAAATGCTTTCAGAACGTGAACGG
ACGCATCGGCTTCAATATCGGCAGCTTCAAAAAATCCAAAAGCTGAAAGCCTCTCCCTACTTCGGCCGTGTCGATTTTAC
GGAAAAAGGGGAATCTTCTTCCGAGCGGATTTATATCGGGCTGACTTCTTTGATGGACGAAAACAATGAGCAATTTCTCA
TTTACGATTGGCGGGCGCCCATCTCATCTCTTTACTATCAATATTCCCCGGGAAAAGCCCGCTACGAAGTTCCGGATGAA
ATCATAGAAGGCGACATCACACTGAAGCGGCAGTTTATCATTAAAAACGGGACGCTTAAAGCGATGTTCAACACGGATAT
GACGATTGGTGACGAAATGCTGCAAGAGGTGCTGAGCGAACATTCCGGCCGGCATATGAAAAATATCGTGTCAACCATTC
AAAAAGAACAAAATGAAATCATCCGGGATGAAAAAAGCAAATATCTCATCGTTCAGGGAGCCGCCGGAAGCGGGAAAACA
TCCGCGGCGCTTCAGCGGGCCGCTTATTTGCTATACCGGGGGCGCGGTGTGCTTGATGCCCGTCAGATTGTGCTGTTTTC
CCCAAACATTTTGTTCAACAGTTACGTTTCCGCCGTATTGCCGGAATTGGGAGAAGAGAATATGGAGCAGGCCACCTTTC
AGGAATATATCGCCCGCCGGCTCGGACGAAAGTTTGATTGTGAAAGCCCGTACGAGCAGCTCGAATATTGCCTGACTGAG
CAAAATCAGGACGCGCTTTTCGTAAGGCTCACAGCCATCGCCTACAAAGCGTCATCAGCTTTCCGGACCATGATTGACCG
TTACGCCGGATCGCTTTCCGTCTCCGGCCTGATGTGTAAACAGGTCAGCTTCCGGGGAGAAATGCTGATTTCAAAAGAGC
GGATTGAAGATTACTTTTACTCACTTGATCAGCAGCTGCCGATTCCGAACAGAGCGGAGCTGACGGCGGAATGGCTTCTT
GCGGAAATCAGCGCACTCGAAAAAAAGGAACGTAAGAAGGAATGGGTTCTGCAGGAGAGTGAGCTGCTTGATAAGGAAGA
CTATGCTCAGGTTTATCAAAAACTCAAGAAGCAAGAGGCGGATGATGAACCTGCTTTTGACGACCATCAGCGCGAACAGC
GGCTGCTTGGCGCCATCATTGTGGGGAAAGCTTTTAAGCCGATTAAGCAGGCCGTCAGACAGCTTGGCTTTCTCGATATA
AACCGGATGTATCTCCGGCTGTTTTCAGACTGGGGATCATATGAAAAGCCTGATCAATGGCAGAGCATCGGCGCTTTGAC
CCGGAAAGCGTTCGCAGAGCAGTCACTCCCTTATGAAGATGCAGCTCCGTATCTTTATTTGCAGGATCTAATAGAAGGAA
AAAGAAAAAACACACAAATGAAGCACGTATTCATTGATGAAGCGCAGGATTATTCCCCATTTCAGCTGACGTATATTCAA
AGCATCTTCCCAGCCGCGAAGATGACGGTGCTCGGTGATATCATCCAGTCGATTTATGCCCACACCATCACAGGCCCTTC
TTCACTTGCCGGCTGCTTTCGCAACGGCGCAGAAAAGTATGTCAGCCTGAAGCGGACTTACAGATCGACGCGGCAGATTG
TTGAATTTACAAAAGCGCTGCTCGATGACGGCGATGACATTGAGCCTTTTAACCGGAACGGGGAAAAACCGCGTGTCCTG
CGGGCGGATACAGAAAAAGCGCGGCAGGAGCAATTGACGGAAACAATACGGGAGCTCAGGAAAAAAGGCTGGGAAACGAT
CGCCGTCATCTGCAAAACTGCCGCGGAAGCAAAAAAAGTATTTCAGGCGGCCAGCGTCGCAAGCGATGTCCGTTTGATCA
ATAAAGAAAATCAGCCTTTCCAAAAAGGGGTATGCGTCATTCCCGTGTATTTGGCAAAAGGCATTGAGTTTGACGCCGTC
ATTGTCGCTGACGCCTCTGTTACCCAGTACAAAAGCCAGCATGACCGCAAGCTGTTATATACGGCCTGCACGCGGGCGAT
GCATCATCTGACCGTGCTGTCTCCCGGAGAAACTTCTCCTTTTATAAAAGAAGTGCCCGCCGGCTTATTCGTGTAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(704-752)

AAA domain (AAA_19)

(217-580)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

66.753

99.87

0.667