Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Regulator
Locus tag   QTN46_RS16420 Genome accession   NZ_CP128501
Coordinates   3013592..3014467 (-) Length   291 a.a.
NCBI ID   WP_013353397.1    Uniprot ID   A0A9P1JJW3
Organism   Bacillus amyloliquefaciens strain SRCM123386     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 3008592..3019467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN46_RS16385 (QTN46_16385) - 3008780..3009256 (+) 477 WP_013353390.1 Na+/H+ antiporter subunit E -
  QTN46_RS16390 (QTN46_16390) - 3009256..3009540 (+) 285 WP_013353391.1 Na(+)/H(+) antiporter subunit F1 -
  QTN46_RS16395 (QTN46_16395) mnhG 3009524..3009898 (+) 375 WP_013353392.1 monovalent cation/H(+) antiporter subunit G -
  QTN46_RS16400 (QTN46_16400) - 3009938..3010321 (-) 384 WP_013353393.1 hotdog fold thioesterase -
  QTN46_RS16405 (QTN46_16405) comA 3010343..3010987 (-) 645 WP_014472195.1 response regulator transcription factor Regulator
  QTN46_RS16410 (QTN46_16410) comP 3011068..3013374 (-) 2307 WP_289393861.1 histidine kinase Regulator
  QTN46_RS16415 (QTN46_16415) comX 3013397..3013573 (-) 177 WP_013353396.1 competence pheromone ComX -
  QTN46_RS16420 (QTN46_16420) comQ 3013592..3014467 (-) 876 WP_013353397.1 polyprenyl synthetase family protein Regulator
  QTN46_RS16425 (QTN46_16425) degQ 3014619..3014759 (-) 141 WP_013353398.1 degradation enzyme regulation protein DegQ Regulator
  QTN46_RS16430 (QTN46_16430) - 3015224..3015565 (+) 342 WP_013353399.1 hypothetical protein -
  QTN46_RS16435 (QTN46_16435) - 3015572..3016795 (-) 1224 WP_013353400.1 EAL and HDOD domain-containing protein -
  QTN46_RS16440 (QTN46_16440) - 3016925..3018391 (-) 1467 WP_014472199.1 nicotinate phosphoribosyltransferase -
  QTN46_RS16445 (QTN46_16445) - 3018409..3018960 (-) 552 WP_013353402.1 isochorismatase family cysteine hydrolase -
  QTN46_RS16450 (QTN46_16450) - 3019041..3019436 (-) 396 WP_289393862.1 DUF1694 domain-containing protein -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 33461.48 Da        Isoelectric Point: 5.9224

>NTDB_id=774076 QTN46_RS16420 WP_013353397.1 3013592..3014467(-) (comQ) [Bacillus amyloliquefaciens strain SRCM123386]
MCLDAETIKGKMKEIVGDKVDNLHLEETLLTFINEKKHFSFGVLAFQHYVAFKGTHSSEITLLAAGIELLILAFDIFDDI
EDEDNFNKAWMQTDHAISLNAATSLYSISLQAICELESNIDFSRLAIKYALNAMQGQHNDLRNFPETEEECLHMIKQKSG
SLTAMSAVLGAMLASGEFNATIENYSYKIGVIKQIENDYYGLFDKSRSDIKKKKRTLINLFLNRQFNSASKKVLNMMNSK
NSYYSLISDRNYFEELLCKAGVRQYVLMLIKIYENEIYNEMEKLNIRIKLW

Nucleotide


Download         Length: 876 bp        

>NTDB_id=774076 QTN46_RS16420 WP_013353397.1 3013592..3014467(-) (comQ) [Bacillus amyloliquefaciens strain SRCM123386]
ATGTGTTTAGATGCCGAAACGATTAAAGGGAAGATGAAGGAAATTGTTGGGGATAAAGTCGATAATCTACATTTAGAAGA
GACTCTTTTGACCTTCATTAATGAAAAGAAGCACTTTTCATTCGGTGTCCTTGCTTTCCAGCATTATGTTGCTTTTAAGG
GTACACATTCCTCGGAAATCACACTACTGGCCGCTGGAATTGAACTTTTAATTTTAGCTTTTGATATTTTTGACGATATT
GAAGATGAAGATAACTTTAATAAGGCATGGATGCAAACTGACCATGCTATATCCCTGAATGCGGCTACTTCTCTGTATTC
AATAAGCCTGCAAGCCATTTGTGAGCTTGAATCAAACATCGATTTTTCAAGACTTGCAATAAAATATGCCCTAAATGCAA
TGCAAGGTCAGCATAATGATCTAAGAAATTTCCCGGAGACTGAAGAAGAGTGTTTACATATGATAAAACAGAAATCAGGA
TCGTTAACTGCAATGTCAGCTGTTTTAGGGGCGATGCTTGCAAGTGGTGAATTTAACGCAACAATTGAGAATTATTCTTA
TAAAATTGGCGTTATTAAACAAATTGAAAATGACTATTATGGTTTATTTGATAAAAGCCGTAGTGATATAAAGAAGAAGA
AAAGAACTTTGATAAACTTGTTTTTAAATCGTCAGTTTAATAGTGCCTCAAAAAAAGTTTTAAATATGATGAATTCTAAA
AACAGCTATTACTCTCTCATATCGGACAGAAATTATTTTGAAGAATTGCTGTGTAAAGCAGGAGTCAGACAATATGTTTT
AATGTTAATTAAAATATATGAAAATGAAATTTATAACGAAATGGAAAAGTTGAACATAAGAATTAAACTATGGTGA

Domains

Predicted by InterProScan.

Polyprenyl synthetase (polyprenyl_synt)

(44-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JJW3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

46.182

94.502

0.436