Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   QTN46_RS11860 Genome accession   NZ_CP128501
Coordinates   2208494..2209984 (-) Length   496 a.a.
NCBI ID   WP_289393699.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SRCM123386     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2203494..2214984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN46_RS11830 (QTN46_11830) gudB 2203573..2204847 (-) 1275 WP_013352705.1 NAD-specific glutamate dehydrogenase -
  QTN46_RS11835 (QTN46_11835) - 2205009..2205593 (-) 585 WP_013352706.1 genetic competence negative regulator -
  QTN46_RS11840 (QTN46_11840) - 2205681..2206529 (-) 849 WP_289393697.1 metallophosphoesterase -
  QTN46_RS11845 (QTN46_11845) - 2206616..2207074 (-) 459 WP_013352708.1 YpbF family protein -
  QTN46_RS11850 (QTN46_11850) - 2207138..2207914 (-) 777 WP_193350361.1 LysM peptidoglycan-binding domain-containing protein -
  QTN46_RS11855 (QTN46_11855) - 2207892..2208479 (-) 588 WP_193350362.1 CPBP family intramembrane glutamic endopeptidase -
  QTN46_RS11860 (QTN46_11860) recS 2208494..2209984 (-) 1491 WP_289393699.1 ATP-dependent DNA helicase RecQ Machinery gene
  QTN46_RS11865 (QTN46_11865) - 2209977..2211035 (-) 1059 WP_289393700.1 helix-turn-helix domain-containing protein -
  QTN46_RS11870 (QTN46_11870) - 2211305..2211553 (+) 249 WP_003153403.1 ferredoxin -
  QTN46_RS11875 (QTN46_11875) - 2211692..2212264 (-) 573 WP_289393701.1 ECF transporter S component -
  QTN46_RS11880 (QTN46_11880) serA 2212753..2214330 (+) 1578 WP_013352714.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 55941.97 Da        Isoelectric Point: 6.0757

>NTDB_id=774040 QTN46_RS11860 WP_289393699.1 2208494..2209984(-) (recS) [Bacillus amyloliquefaciens strain SRCM123386]
MTELHKALYRNFGLHSFKKGQEEIITSVLQKKDTIAMLPTGGGKSLCYQLPGYIMDGLVLIISPLLSLMEDQVQQLKAKG
EKRVAALNSMLNSDERHFILSNISRYKFLYMSPEALSSPYVLNRLKNVPVSLFVIDEAHCISEWGHDFRPDYSKLGPFRQ
ALGKPPVLALTATATKETLRDVADVLGLEHAVRHLYSVNRPNILLAVEHVADNAEKISRVTELAEKLEGPGIVYCPTRKW
AEELAAELNEKTGKRTDYYHGGMDTGDRILIQQQFIHNQLDCICCTNAFGMGVDKSDIRFVIHFYPPQTAEAFMQEIGRA
GRDGSPSVSILLRAPGDTELQQQIIQTESLSGYDLEGILAVIRDAGTSDERKLRDVLISKGVQETQARTAIHLYLQGKTT
KEQLQEELTCRVEKKLHKMNRFSALLERKECIREALLAYFDESYEPESQTGQCCSSCGIDLAPYEQKGERKNMERFEDWK
LELDRIFGLESAGEFS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=774040 QTN46_RS11860 WP_289393699.1 2208494..2209984(-) (recS) [Bacillus amyloliquefaciens strain SRCM123386]
ATGACTGAGCTGCACAAAGCTTTATACCGGAATTTTGGTCTGCATTCGTTTAAAAAAGGGCAGGAAGAAATCATCACCAG
CGTGCTTCAAAAGAAGGATACGATTGCCATGCTTCCGACAGGCGGGGGGAAATCATTATGCTATCAGCTTCCGGGTTACA
TAATGGACGGGCTGGTACTGATTATTTCACCTCTTCTTTCATTAATGGAAGATCAGGTGCAGCAGCTGAAGGCGAAAGGA
GAAAAGCGGGTTGCGGCATTAAACAGCATGCTGAATTCTGACGAGCGGCATTTTATCCTCAGCAACATCAGCCGTTACAA
ATTTCTTTATATGTCTCCTGAAGCCCTCTCGTCACCTTATGTGCTGAACCGTTTGAAAAACGTCCCGGTCAGTTTATTTG
TCATTGATGAGGCTCATTGCATATCAGAGTGGGGACATGATTTCAGGCCTGATTATTCAAAGCTCGGACCTTTCAGGCAA
GCACTCGGCAAGCCGCCTGTATTGGCGCTGACCGCGACAGCGACGAAAGAAACGCTCAGGGATGTGGCGGATGTGCTCGG
ACTTGAGCATGCGGTGCGCCATCTATATTCGGTCAACCGGCCGAATATTCTCTTGGCGGTTGAACATGTGGCTGATAATG
CCGAAAAAATCAGCAGGGTCACAGAGCTTGCCGAAAAGCTCGAGGGCCCGGGCATCGTATATTGTCCGACCAGAAAATGG
GCGGAAGAGCTTGCGGCCGAGCTGAACGAAAAAACGGGAAAGCGGACGGATTATTATCACGGGGGAATGGATACAGGCGA
CAGGATATTAATTCAGCAGCAATTTATCCATAACCAGCTTGATTGCATTTGCTGCACCAATGCGTTCGGCATGGGTGTGG
ATAAGTCTGATATCCGCTTTGTTATTCACTTTTATCCTCCCCAAACGGCCGAGGCCTTTATGCAGGAAATCGGAAGAGCG
GGCCGCGACGGAAGCCCGAGTGTCAGTATTTTGCTGAGAGCGCCGGGCGATACCGAGCTTCAGCAGCAGATTATTCAGAC
AGAAAGTTTGTCCGGTTACGACCTGGAAGGCATTCTGGCCGTCATACGGGACGCCGGTACGAGCGATGAGCGAAAGCTTC
GGGATGTTCTGATAAGCAAGGGCGTTCAGGAAACACAGGCGCGAACGGCCATCCACCTGTACCTGCAAGGAAAAACCACT
AAAGAGCAGCTGCAGGAAGAACTGACATGCCGCGTGGAAAAGAAGCTGCATAAAATGAACCGCTTTTCGGCGTTATTGGA
GCGGAAAGAATGTATAAGAGAAGCGCTATTAGCTTACTTTGATGAATCGTATGAGCCTGAAAGTCAAACCGGGCAATGCT
GCAGCAGCTGCGGAATTGATCTGGCCCCATACGAGCAAAAAGGAGAACGGAAAAACATGGAGCGGTTTGAAGATTGGAAG
CTGGAATTAGACCGGATTTTCGGTTTAGAGTCTGCGGGTGAGTTCAGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(20-178)

Helicase conserved C-terminal domain (Helicase_C)

(216-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

69.556

100

0.696